prot_M-pyrifera_M_contig121861.4502.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig121861.4502.1
Unique Nameprot_M-pyrifera_M_contig121861.4502.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length49
Homology
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BLAST of mRNA_M-pyrifera_M_contig121861.4502.1 vs. uniprot
Match: F4PQI4_CAVFA (General transcription factor IIH subunit n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PQI4_CAVFA)

HSP 1 Score: 53.5 bits (127), Expect = 5.820e-7
Identity = 19/46 (41.30%), Postives = 28/46 (60.87%), Query Frame = 0 
Query:    1 CAGCNVAIPADLPRTLCPRCHWPFCTACDQIIHQTLHHCPGCSPAI 46
            C GC + I  +     CPRC   FC  CDQ++H+++H+CPGC   +
Sbjct:  365 CYGCLLPIKPNYLNYGCPRCKKIFCFDCDQVVHESIHNCPGCENGL 410
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BLAST of mRNA_M-pyrifera_M_contig121861.4502.1 vs. uniprot
Match: UPI000711B1D9 (transcription factor IIh subunit n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711B1D9)

HSP 1 Score: 47.8 bits (112), Expect = 6.390e-5
Identity = 17/42 (40.48%), Postives = 22/42 (52.38%), Query Frame = 0 
Query:    1 CAGCNVAIPADLPRTLCPRCHWPFCTACDQIIHQTLHHCPGC 42
            C GC            CP CH  FC  CD  +H++++HCPGC
Sbjct:  344 CYGCYSEFHEGDVCMQCPSCHNLFCETCDDFLHESIYHCPGC 385
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121861.4502.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F4PQI4_CAVFA5.820e-741.30General transcription factor IIH subunit n=1 Tax=C... [more]
UPI000711B1D96.390e-540.48transcription factor IIh subunit n=1 Tax=Blastocys... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004595TFIIH C1-like domainSMARTSM01047C1_4_2coord: 1..43
e-value: 2.9E-5
score: 23.6
IPR004595TFIIH C1-like domainPFAMPF07975C1_4coord: 14..43
e-value: 9.6E-8
score: 32.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..43
e-value: 6.4E-11
score: 44.2
NoneNo IPR availableSUPERFAMILY57889Cysteine-rich domaincoord: 1..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121861contigM-pyrifera_M_contig121861:98..244 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121861.4502.1mRNA_M-pyrifera_M_contig121861.4502.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig121861 98..244 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig121861.4502.1 ID=prot_M-pyrifera_M_contig121861.4502.1|Name=mRNA_M-pyrifera_M_contig121861.4502.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
CAGCNVAIPADLPRTLCPRCHWPFCTACDQIIHQTLHHCPGCSPAIRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004595TFIIH_C1-like_dom
IPR013083Znf_RING/FYVE/PHD