prot_M-pyrifera_M_contig121463.4420.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig121463.4420.1
Unique Nameprot_M-pyrifera_M_contig121463.4420.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length122
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121463.4420.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 85..109
e-value: 13.0
score: 13.6
coord: 59..84
e-value: 8.4
score: 15.1
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 84..106
e-value: 8.1E-4
score: 19.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..117
e-value: 1.3E-17
score: 65.2
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 2..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121463contigM-pyrifera_M_contig121463:8..373 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121463.4420.1mRNA_M-pyrifera_M_contig121463.4420.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig121463 8..373 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig121463.4420.1 ID=prot_M-pyrifera_M_contig121463.4420.1|Name=mRNA_M-pyrifera_M_contig121463.4420.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
ALATLPFLTHLDLRASHLSNETFHALPSTPFPSKLALVLLDRNPLLSTAG
LLPLFQHTASSLRHLSLRACVSVNDDTLLTLAHHSHHLRSIDLAGCPLSD
AGIVPLLQSNPNLTSFAAGQIA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf