prot_M-pyrifera_M_contig120958.4308.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig120958.4308.1
Unique Nameprot_M-pyrifera_M_contig120958.4308.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length178
Homology
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A1W0A5Z5_9STRA (UV excision repair protein RAD23 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5Z5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.740e-17
Identity = 52/149 (34.90%), Postives = 75/149 (50.34%), Query Frame = 0
Query:   24 LARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGM-TPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQML 171
            L  LR HP FD LR  ++ NP+ALP +L +IG   P+LL+LI+ ++ +FVRM+N+   +   +                              M GGM TP QL Q+               MGM+P+QL  F QM+++ PPEA+QQM+
Sbjct:  140 LEALRNHPQFDALRRLIQANPAALPTVLQQIGNQSPELLRLIHQNQEQFVRMLNEPITETSPS-------------------QQGGFGDIDDGMGGGMPTPQQLQQLMASLSPEQQAQMAAQMGMTPQQLQQFSQMLSQMPPEAVQQMM 269          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A8J2SQ80_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQ80_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.750e-16
Identity = 55/158 (34.81%), Postives = 74/158 (46.84%), Query Frame = 0
Query:   23 PLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGG--MTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAGAG 178
            PLA LR+HP FDELR T++ NP++L  +L  +G  DP LLQ I  ++AEF+ MMN+   +APA GA                              GG  +  AQ A+                +G++PEQ   F Q M   P E L+Q+LG   G G
Sbjct:  178 PLAVLRSHPQFDELRRTIQANPASLQQVLQGLGREDPQLLQTIKDNQAEFLAMMNEPVQEAPAMGA------------------------------GGDDLDAAQFARAMQSISPQQRAQLAATIGLTPEQFEQFSQQMQNMPREQLRQLLGALGGGG 305          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A7S1FMD0_9STRA (UV excision repair protein RAD23 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMD0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.220e-15
Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = 0
Query:   17 GAAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND---SSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAGAG 178
            G+  G PLA LR+HP FD+LR  V+ NP +L A+L++IG   P+LLQ IN ++A F+ MMN+   +++  PAA                                G   PAQ++Q+               MG++PEQL A + M++  P +  QQ +  A G G
Sbjct:  241 GSGSGTPLAALRSHPQFDDLRRLVQNNPQSLQAVLAQIGQQSPELLQEINGNQAAFIEMMNEPVAANSTNPAAAPPRPNIPAGGPPTGMLENL------------GMADPAQMSQLLASLSPNELQDMATMMGLTPEQLRATLSMISNMPQDQFQQQMMQALGQG 393          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A2R5GGA8_9STRA (UV excision repair protein RAD23-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGA8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.560e-14
Identity = 77/158 (48.73%), Postives = 95/158 (60.13%), Query Frame = 0
Query:   20 GGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDS-SADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAG 176
            GGGPLA LR HP F+ LR  V+ NP+AL  +L ++G+TDPDLL+ INA++AEFV +MN+    DA     XXXXXXXXXXXX      XXXXXXXXXX P       L Q+               MG+ PEQL A  QM    PP+A+ Q++ G  G
Sbjct:  277 GGGPLAALRQHPDFNNLRRLVQNNPAALGTVLQQLGSTDPDLLEAINANRAEFVSIMNEPIDEDASXXXXXXXXXXXXXXXXSGGAPAXXXXXXXXXXGPDVQQLMGLLQLMQQMPEEQRAQLATQMGVPPEQLQAITQM----PPQAMAQLMQGMMG 430          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A7S2R650_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R650_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.340e-14
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 0
Query:    2 PPPAASAPGASAAPA------GAAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAA 86
            PP  A APGA A PA      GA G G LA+LR HP F+ELR  V++NP+AL ++L +IG   P LL+ I A+ AEF+RM+N+  A APAA
Sbjct:  201 PPAGAPAPGAGATPAXXXXTSGAGGPGGLAQLRNHPQFNELRRLVQSNPAALESVLQQIGAQSPQLLEEIQANTAEFLRMLNEPVAAAPAA 291          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A067D6B3_SAPPC (UV excision repair protein Rad23 n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D6B3_SAPPC)

HSP 1 Score: 77.4 bits (189), Expect = 1.930e-13
Identity = 55/150 (36.67%), Postives = 75/150 (50.00%), Query Frame = 0
Query:    4 PAASAPGASAAPAGAAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGM-TPAQLAQMXXXXXXXXXXXXXXXMGMSPEQL 152
            PAA+AP A +A  G AG   L  LR HP FD LR  +++NP+ALP +L +IG   P+LL+LI+A++ +FVRM+N+  A+A  A                              M G M TP QL Q+               MGM+P+QL
Sbjct:  191 PAAAAPAAPSAAGGLAGTNSLEALRNHPQFDALRRLIQSNPAALPTVLQQIGGQSPELLRLIHANQEQFVRMLNEPIAEAAPADQGGFGDMDD--------------------MGGAMPTPQQLQQLMASLSPEQQAQMAAQMGMTPQQL 320          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: K0T4F8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T4F8_THAOC)

HSP 1 Score: 76.6 bits (187), Expect = 4.090e-13
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 0
Query:   23 PLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAG 87
            PLA LR HP FD LR  V++NP+AL  +L++IG   P+LLQ INA++ EF+ MMN+  A+APA G
Sbjct:  302 PLAALRNHPQFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPVAEAPAGG 366          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A7S2W866_9STRA (UV excision repair protein RAD23 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W866_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.740e-12
Identity = 59/167 (35.33%), Postives = 75/167 (44.91%), Query Frame = 0
Query:   18 AAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND-----------SSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGG 173
            AAGG PLA LR HP F+ LR  V+ NP AL  +L +IG  +P LL+ IN ++ EFVR+MN+           S+ADA AA A                                M P Q A++               MG+ PEQL A  QMM   P +A  QM+ G
Sbjct:  201 AAGGEPLAALRQHPQFNNLRRVVQNNPGALSTVLQQIGQGNPQLLEEINNNREEFVRIMNEPLEEGTGGNTPSAADAAAAIAGSGGMPAGVPHPEEFLAVLTAVQQ--------MPPDQRARVAQA------------MGVPPEQLQAITQMMQNMPAQARAQMMEG 347          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: F0YBM6_AURAN (UV excision repair protein RAD23 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBM6_AURAN)

HSP 1 Score: 73.2 bits (178), Expect = 5.080e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 0
Query:   19 AGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND 78
            AG  PLA LRAHP FD+LR T++ NP AL  +L+ IG   P+LL LI+A++AEF++MMN+
Sbjct:  195 AGASPLATLRAHPQFDDLRRTIQANPGALQQVLAGIGRDSPELLALIHANQAEFLQMMNE 254          
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Match: A0A6S8CF64_9STRA (UV excision repair protein RAD23 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CF64_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.380e-12
Identity = 59/163 (36.20%), Postives = 85/163 (52.15%), Query Frame = 0
Query:   17 GAAGGGPLARLRAHPLFDELRTTVRTNPSALPAILSRIGTTDPDLLQLINAHKAEFVRMMND-SSADAPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGGMTPAQLAQMXXXXXXXXXXXXXXXMGMSPEQLGAFMQMMARAPPEALQQMLGGAAGAG 178
            G A   P+A +RAHP F E+R TV+ NP++L  +L ++G TDP LLQLI+ ++A F+  +N+ SSA +  A          XXXXXXXX                +TP Q AQ+               +G++P+QL  F + M   P + L+Q+LG  A  G
Sbjct:  187 GIASNDPIATIRAHPRFAEIRQTVQQNPASLQTMLQQLGQTDPQLLQLIHQNQAAFLAAVNEPSSAVSGIANTGDGDAEGGXXXXXXXXNDAGFDEQAFARAMASITPQQRAQVAAT------------VGLTPDQLEQFARQMQSMPRDQLRQLLGAFAAGG 337          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120958.4308.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W0A5Z5_9STRA4.740e-1734.90UV excision repair protein RAD23 n=1 Tax=Thraustot... [more]
A0A8J2SQ80_9STRA6.750e-1634.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1FMD0_9STRA7.220e-1532.73UV excision repair protein RAD23 n=2 Tax=Corethron... [more]
A0A2R5GGA8_9STRA2.560e-1448.73UV excision repair protein RAD23-like n=1 Tax=Hond... [more]
A0A7S2R650_9STRA3.340e-1452.75Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A067D6B3_SAPPC1.930e-1336.67UV excision repair protein Rad23 n=1 Tax=Saprolegn... [more]
K0T4F8_THAOC4.090e-1355.38Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2W866_9STRA1.740e-1235.33UV excision repair protein RAD23 n=1 Tax=labyrinth... [more]
F0YBM6_AURAN5.080e-1256.67UV excision repair protein RAD23 n=1 Tax=Aureococc... [more]
A0A6S8CF64_9STRA8.380e-1236.20UV excision repair protein RAD23 n=1 Tax=Aureoumbr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036353XPC-binding domain superfamilyGENE3D1.10.10.540coord: 13..79
e-value: 2.1E-20
score: 74.0
IPR036353XPC-binding domain superfamilySUPERFAMILY101238XPC-binding domaincoord: 20..83
IPR015360XPC-binding domainPFAMPF09280XPC-bindingcoord: 24..78
e-value: 8.1E-19
score: 67.1
NoneNo IPR availablePANTHERPTHR10621:SF13UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG Bcoord: 5..100
NoneNo IPR availablePANTHERPTHR10621UV EXCISION REPAIR PROTEIN RAD23coord: 5..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120958contigM-pyrifera_M_contig120958:2..535 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120958.4308.1mRNA_M-pyrifera_M_contig120958.4308.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig120958 2..535 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig120958.4308.1 ID=prot_M-pyrifera_M_contig120958.4308.1|Name=mRNA_M-pyrifera_M_contig120958.4308.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
APPPAASAPGASAAPAGAAGGGPLARLRAHPLFDELRTTVRTNPSALPAI
LSRIGTTDPDLLQLINAHKAEFVRMMNDSSADAPAAGAPGSPGAAGAAGA
PGAAGDMGGAGAGMGGMPGGMTPAQLAQMVGSMTPEQRAQLAASMGMSPE
QLGAFMQMMARAPPEALQQMLGGAAGAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036353XPC-bd_sf
IPR015360XPC-bd