prot_M-pyrifera_M_contig119096.3921.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig119096.3921.1
Unique Nameprot_M-pyrifera_M_contig119096.3921.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length180
Homology
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BLAST of mRNA_M-pyrifera_M_contig119096.3921.1 vs. uniprot
Match: A0A401FTF1_9DELT (LamGL domain-containing protein n=1 Tax=Desulfonema ishimotonii TaxID=45657 RepID=A0A401FTF1_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 5.110e-6
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0 
Query:    1 CPSDPNKTEPEDCGCGVAETDSDGDGVEDCLD 32
            CPSDP+K+EP DCGCGV +TD+DG GV DCLD
Sbjct:  281 CPSDPDKSEPGDCGCGVPDTDTDGXGVSDCLD 312
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BLAST of mRNA_M-pyrifera_M_contig119096.3921.1 vs. uniprot
Match: A0A3A0CNR9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0CNR9_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.770e-5
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 
Query:    1 CPSDPNKTEPEDCGCGVAETDSDGDGVEDCLD 32
            CPSDPNKT P  CGCGVA+TD++GDGV DC D
Sbjct:  649 CPSDPNKTSPGACGCGVADTDTEGDGVPDCND 680
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119096.3921.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A401FTF1_9DELT5.110e-675.00LamGL domain-containing protein n=1 Tax=Desulfonem... [more]
A0A3A0CNR9_9BACT1.770e-575.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003367Thrombospondin, type 3-like repeatPFAMPF02412TSP_3coord: 48..72
e-value: 9.6E-4
score: 18.8
coord: 15..40
e-value: 9.2E-5
score: 22.0
coord: 114..140
e-value: 0.0034
score: 17.0
IPR028974TSP type-3 repeatSUPERFAMILY103647TSP type-3 repeatcoord: 77..171
IPR028974TSP type-3 repeatSUPERFAMILY103647TSP type-3 repeatcoord: 1..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119096contigM-pyrifera_M_contig119096:1..540 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119096.3921.1mRNA_M-pyrifera_M_contig119096.3921.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig119096 1..540 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig119096.3921.1 ID=prot_M-pyrifera_M_contig119096.3921.1|Name=mRNA_M-pyrifera_M_contig119096.3921.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
CPSDPNKTEPEDCGCGVAETDSDGDGVEDCLDNCPSDPNKTEPEDCGCGV
AETDSDGDGVEDCNDGCPSNPAKTEPGVCGCVALDVDSDGDGVLDCDDLC
PSDPNKVDPGVCGCGQSDNDTDGDGTLNCQDGCPADPNKTSPGQCGCGAD
ETDSDGDGTPDCLDDCPNDSPKTSPGICGC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003367Thrombospondin_3-like_rpt
IPR028974TSP_type-3_rpt