prot_M-pyrifera_M_contig118918.3888.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig118918.3888.1
Unique Nameprot_M-pyrifera_M_contig118918.3888.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length106
Homology
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BLAST of mRNA_M-pyrifera_M_contig118918.3888.1 vs. uniprot
Match: UPI001907711E (hypothetical protein n=1 Tax=Streptomyces sp. HSG2 TaxID=2797167 RepID=UPI001907711E)

HSP 1 Score: 50.8 bits (120), Expect = 4.680e-5
Identity = 35/102 (34.31%), Postives = 51/102 (50.00%), Query Frame = 0 
Query:    2 STLEVYNSTFDGNVGSTYGALVSEDAHFNIVESTFVNNQCLGVGNQQGGAMF--LGGSVGNITDCLLSNNAAGSGGAIFVDNCDVDLSGSLFQGNSALESGG 101
            S LE+  S F GN   T+G + + +    I +S F NN         G A+   LGG+        L++ A  +GGA++V + D+ L  S   GNSAL +GG
Sbjct:  304 SKLEITASKFTGNTSRTWGTIATFNGATTIAKSLFKNNTA-----DLGPAVTSALGGTTDIDKSAFLNHRATSTGGAVYVQDTDLQLRRSTVAGNSALVAGG 400
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118918.3888.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001907711E4.680e-534.31hypothetical protein n=1 Tax=Streptomyces sp. HSG2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 90..105
e-value: 0.15
score: 12.6
coord: 64..78
e-value: 0.015
score: 15.7
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 90..106
e-value: 0.0011
score: 16.7
coord: 67..83
e-value: 8.8E-4
score: 17.0
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 3..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118918contigM-pyrifera_M_contig118918:204..521 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118918.3888.1mRNA_M-pyrifera_M_contig118918.3888.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig118918 204..521 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig118918.3888.1 ID=prot_M-pyrifera_M_contig118918.3888.1|Name=mRNA_M-pyrifera_M_contig118918.3888.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
SSTLEVYNSTFDGNVGSTYGALVSEDAHFNIVESTFVNNQCLGVGNQQGG
AMFLGGSVGNITDCLLSNNAAGSGGAIFVDNCDVDLSGSLFQGNSALESG
GGVYCS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence