prot_M-pyrifera_M_contig118683.3844.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig118683.3844.1
Unique Nameprot_M-pyrifera_M_contig118683.3844.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length143
Homology
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BLAST of mRNA_M-pyrifera_M_contig118683.3844.1 vs. uniprot
Match: F0ZPN3_DICPU (Spatacsin_C domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZPN3_DICPU)

HSP 1 Score: 58.9 bits (141), Expect = 2.530e-7
Identity = 44/172 (25.58%), Postives = 76/172 (44.19%), Query Frame = 0 
Query:    1 MDHWQDMTDLQVVREGLQSNQLSLAYSLVLWRAICRREEG------------------SEGGESLP--------SMEDIMTAGFCFVYQCLTTGDMDMADKMLSCVGETRVEVLLEVLLHTKRKALRQSLLRFLSSRGAVVENY---PEVLEGVQFLTVLEERYSNPYYALE 143
            +D W+ M +L++++E L S  LS   S + W+   R ++G                  +    SL         + +D+     CFVYQ ++   +++A K+L  +G      L ++  +T R+ +R  LL  L S   V +     PE+LE + F + L+  Y N  Y  E
Sbjct: 1101 LDRWERMEELEIIKESLNSGNLSTLISYINWK---REKKGVLYQQPISNTLKQYQLQQTSSSSSLKFISPIGPFTFDDVQKISSCFVYQAVSQDQLEVAIKLLKTIGSPVSPNLKQLAFNTTRRNIRNLLLDALVSHPMVKDPSFFTPEILELIDFRSKLDSLYPNFSYHRE 1269
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118683.3844.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F0ZPN3_DICPU2.530e-725.58Spatacsin_C domain-containing protein n=1 Tax=Dict... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028103SpatacsinPANTHERPTHR13650UNCHARACTERIZEDcoord: 1..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118683contigM-pyrifera_M_contig118683:5..433 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118683.3844.1mRNA_M-pyrifera_M_contig118683.3844.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig118683 5..433 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig118683.3844.1 ID=prot_M-pyrifera_M_contig118683.3844.1|Name=mRNA_M-pyrifera_M_contig118683.3844.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MDHWQDMTDLQVVREGLQSNQLSLAYSLVLWRAICRREEGSEGGESLPSM
EDIMTAGFCFVYQCLTTGDMDMADKMLSCVGETRVEVLLEVLLHTKRKAL
RQSLLRFLSSRGAVVENYPEVLEGVQFLTVLEERYSNPYYALE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028103Spatacsin