prot_M-pyrifera_M_contig118304.3785.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig118304.3785.1
Unique Nameprot_M-pyrifera_M_contig118304.3785.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length50
Homology
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7R9UEZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEZ9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.530e-18
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0
Query:    2 SRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 50
            +R VYVGNL WGV+WQDLKDHMR  GEVV ADVL+ P GRSKGCG V +
Sbjct:  188 ARRVYVGNLPWGVAWQDLKDHMRQCGEVVHADVLTGPDGRSKGCGIVEY 236          
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A6H5JB58_9PHAE (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB58_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.260e-17
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0
Query:    5 VYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 50
            VYVGNL W   WQDLKDHMR+AGEVVRADV+ + SGRSKGCG V +
Sbjct:   51 VYVGNLSWETEWQDLKDHMRTAGEVVRADVMRDASGRSKGCGIVEY 96          
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7S3HGW7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGW7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.330e-17
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0
Query:    2 SRTVYVGNLDWGVSWQDLKDHMRSAGEVVR-ADVLSEPSGRSKGCGCVSF 50
            +R+VYVGNL W V+WQDLKDHMRS G +V  ADVL+EPSGRSKGCG V+F
Sbjct:   33 NRSVYVGNLSWDVTWQDLKDHMRSLGGLVEHADVLTEPSGRSKGCGLVTF 82          
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7S1DBL6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBL6_CYCTE)

HSP 1 Score: 82.0 bits (201), Expect = 3.440e-17
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0
Query:    2 SRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 50
            SR VYVGNL W V+WQDLKDHMR AGEVV A+V++E +GRSKGCG V +
Sbjct:   60 SRRVYVGNLSWDVAWQDLKDHMRDAGEVVHAEVITEANGRSKGCGIVEY 108          
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7S4KDH2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KDH2_GUITH)

HSP 1 Score: 77.8 bits (190), Expect = 4.210e-17
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    3 RTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 50
            R VYVGNL W   WQDLKDHMR+AG V+ ADV++ P GRSKGCG V F
Sbjct:   55 RRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEF 102          
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A448YVD1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVD1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.260e-17
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0
Query:    2 SRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 50
            SR VYVGNL W V+W DLKDHM+ AGEVVRADV+ E +GRSKGCG V F
Sbjct:  191 SRRVYVGNLSWDVAWADLKDHMKQAGEVVRADVICEHNGRSKGCGIVEF 239          
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: L1ITL9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ITL9_GUITC)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-16
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    3 RTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 50
            R VYVGNL W   WQDLKDHMR+AG V+ ADV++ P GRSKGCG V F
Sbjct:  103 RRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEF 150          
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7S0JJY0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJY0_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 1.700e-16
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0
Query:    4 TVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEP-SGRSKGCGCVSF 50
            +VYVGNL W VSWQDLKDH ++AGEVV ADV+ EP +GRSKGCG V F
Sbjct:   54 SVYVGNLSWEVSWQDLKDHFKAAGEVVHADVMMEPGTGRSKGCGLVVF 101          
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A6T8LAH9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8LAH9_HEMAN)

HSP 1 Score: 79.3 bits (194), Expect = 1.770e-16
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:    1 SSRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 50
            S + VYVGNL W   WQDLKDHMRS GEV+ ADVL+ P GRSKGCG V +
Sbjct:  206 SGKRVYVGNLSWECQWQDLKDHMRSVGEVLHADVLTGPDGRSKGCGLVEY 255          
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7S3MDE3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDE3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.920e-16
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query:    1 SSRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 50
            S   VYVGNL + VSWQDLKDHM+ AG V+RADV+++ SGRSKGCG V F
Sbjct:   43 SGSRVYVGNLKFEVSWQDLKDHMKQAGRVLRADVMTDASGRSKGCGIVEF 92          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9UEZ9_9STRA9.530e-1873.47Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6H5JB58_9PHAE1.260e-1773.91RRM domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A7S3HGW7_9STRA1.330e-1774.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1DBL6_CYCTE3.440e-1771.43Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4KDH2_GUITH4.210e-1768.75Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A448YVD1_9STRA5.260e-1773.47Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
L1ITL9_GUITC1.260e-1668.75Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0JJY0_9EUKA1.700e-1672.92Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A6T8LAH9_HEMAN1.770e-1668.00Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S3MDE3_9STRA1.920e-1668.00Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..50
e-value: 1.2E-14
score: 56.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 5..50
e-value: 7.0E-11
score: 41.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 3..50
score: 11.145
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 2..50
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118304contigM-pyrifera_M_contig118304:34..183 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118304.3785.1mRNA_M-pyrifera_M_contig118304.3785.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig118304 34..183 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig118304.3785.1 ID=prot_M-pyrifera_M_contig118304.3785.1|Name=mRNA_M-pyrifera_M_contig118304.3785.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
SSRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf