prot_M-pyrifera_M_contig118131.3755.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig118131.3755.1
Unique Nameprot_M-pyrifera_M_contig118131.3755.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length103
Homology
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A7W0KXX1_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KXX1_9ACTN)

HSP 1 Score: 114 bits (285), Expect = 3.340e-30
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 0
Query:    1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAP--ARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 100
            +AYL+RSVLN+A +   S + RRRRE VVAL +P  A +  PE  +DA +AL  LSP+QRAV++L YWEDQT A IA LLD+SEG+VRK LAR RD+LR+ +
Sbjct:   61 RAYLYRSVLNRALSHRRSTASRRRRETVVALSSPSIAPAASPEAELDAHKALAALSPQQRAVVHLTYWEDQTPAQIAGLLDVSEGTVRKQLARARDHLREIL 162          
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A7W0T608_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0T608_9ACTN)

HSP 1 Score: 96.7 bits (239), Expect = 3.140e-23
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:    1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 100
            +AYL+R+VLN AS+     + R  RER VA  +     DP  S+DA+RAL  LSP+QRA++YLAYW+D TA  IADLL + EG+VRK LAR R  LR  +
Sbjct:   67 RAYLYRAVLNTASSHQRRAASRHTRERRVA--SGVIHGDPPSSLDAERALVGLSPQQRAIVYLAYWDDLTAPQIADLLGVGEGTVRKQLARARQRLRSVL 164          
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A524MTB4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524MTB4_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 1.500e-19
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:    1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 100
            +AYL R+V N A+    S  RR RR+  +A   PA +V P+  +D +RA+ +LS  QR VIY  YWED +  DIA LL ++ G+VR+HL R R +LRK +
Sbjct:   60 RAYLMRAVANHANDLRRSRERRWRRD--LAAVGPASTVGPDTFLDVRRAVSSLSLAQRTVIYFVYWEDLSERDIATLLQVAPGTVRRHLVRARAHLRKAL 157          
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A7K1BAT8_9ACTN (Sigma-70 family RNA polymerase sigma factor n=4 Tax=root TaxID=1 RepID=A0A7K1BAT8_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 2.630e-19
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 0
Query:    2 AYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 100
            AYL   V+N A+    S  RR  RE          SVDP  ++D +RAL  LSP+QRA+ YL YWED T  D+A  LD+SEG+VR+ LAR +D LR+ +
Sbjct:   68 AYLTLVVVNGATDRVRSDRRRTDREERAGRLMVTSSVDPTNALDVRRALDRLSPQQRAIAYLVYWEDMTIPDVAHRLDVSEGTVRRQLARAKDRLREVL 166          
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A350XRT4_9ACTN (Sigma70_r4_2 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A350XRT4_9ACTN)

HSP 1 Score: 86.3 bits (212), Expect = 2.650e-19
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:    1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 100
            +A LFR+VL +A   + S +RRR RE   A+   A +VD EP+ +  +A+R LSP+QRAV++ AYW+D     IADLL +S+G+VR+ LAR R  LR+ +
Sbjct:   54 RALLFRAVLFEAHNLHRSAARRRVREEKAAVPV-AVTVDHEPAPEVWQAVRGLSPQQRAVVFFAYWQDLDVTAIADLLGVSDGTVRRQLARARGRLREVL 152          
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A539E0E1_9ACTN (Putative RNA polymerase ECF subfamily sigma factor n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E0E1_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 3.300e-18
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 0
Query:    1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPAR--SVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 100
            +AYLFR+V ++A     S SRRRRR+   A   P R  SV    +VDA++ +  LS +QR +++L YW DQT ADIA +L + EG++RK LAR R  LR+ +
Sbjct:   57 RAYLFRAVHHRAIDHQRSRSRRRRRD---ASLQPQRHDSVGQPAAVDARKVMAALSVQQRTIVFLTYWADQTPADIAGVLAVGEGTIRKQLARARARLREVL 155          
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A7Y1US40_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1US40_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 4.030e-18
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 0
Query:    1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEP-SVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 100
            +AYL+RSVLNQA + + +  RRR RE   A+     S+ P P  +D  RA+  LS +QRA ++L YWED +  ++A  L ISEGSV++HLAR R  L++ +
Sbjct:   52 RAYLYRSVLNQARSHHRTTVRRRIREHATAV---PDSITPVPIDIDVLRAIDKLSMQQRASVFLTYWEDLSPTEVAARLKISEGSVKRHLARARSRLKELL 149          
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A7Y3GHN9_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3GHN9_9ACTN)

HSP 1 Score: 81.3 bits (199), Expect = 3.090e-17
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:    1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 100
            +AYL+RSVLNQA + + S  RRR RE   A   P R       +D  RA+  LS +QRA ++L YW+D   A +A  L ISEGSV++HLAR R  L++ +
Sbjct:   65 RAYLYRSVLNQAHSHHRSTLRRRIREHSAA--GPGRVEQSPVDLDVLRAVDKLSMQQRACVFLTYWDDLAPAQVAARLGISEGSVKRHLARARARLKELL 162          
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A349B828_9ACTN (Sigma70_r4_2 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B828_9ACTN)

HSP 1 Score: 79.7 bits (195), Expect = 1.020e-16
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 0
Query:    2 AYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQ--RALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTMA 101
            AY  R+V+N+A + + S  RR  RE  VA R   R V+  PS++ +  RA+  LS +QR V YLAYW D   ++IAD+L ISEG+VR+ LAR R  LR+T++
Sbjct:   56 AYWVRAVVNEARSTHRSTLRRLTREEAVARR-DHRFVEDAPSLNPEVVRAVAGLSLQQRTVTYLAYWRDLPVSEIADVLAISEGAVRRQLARARSKLRRTLS 156          
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A2H6HH45_9BACT (RNA polymerase sigma-E factor n=1 Tax=bacterium BMS3Bbin02 TaxID=2005725 RepID=A0A2H6HH45_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 1.550e-16
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:    1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 100
            ++YL ++V N+A  F    +RR  RE  V   + +   +  P V A  A+  LS +QRA +YLAYWED T   IAD L IS GSVR+HLAR R++LR+ +
Sbjct:   58 RSYLHQAVANEARNFRRGETRRHDRETRVPTASVSYPREVHPEVRA--AVARLSVRQRATVYLAYWEDMTDHMIADYLGISAGSVRRHLARARNHLRRAL 155          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0KXX1_9ACTN3.340e-3058.82RNA polymerase sigma factor n=1 Tax=Acidimicrobiia... [more]
A0A7W0T608_9ACTN3.140e-2353.00RNA polymerase sigma factor n=1 Tax=Acidimicrobiia... [more]
A0A524MTB4_9ACTN1.500e-1946.00Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7K1BAT8_9ACTN2.630e-1947.47Sigma-70 family RNA polymerase sigma factor n=4 Ta... [more]
A0A350XRT4_9ACTN2.650e-1947.00Sigma70_r4_2 domain-containing protein n=1 Tax=Act... [more]
A0A539E0E1_9ACTN3.300e-1846.08Putative RNA polymerase ECF subfamily sigma factor... [more]
A0A7Y1US40_9ACTN4.030e-1845.54RNA polymerase sigma factor n=1 Tax=Acidimicrobiia... [more]
A0A7Y3GHN9_9ACTN3.090e-1746.00RNA polymerase sigma factor n=1 Tax=Acidimicrobiia... [more]
A0A349B828_9ACTN1.020e-1647.06Sigma70_r4_2 domain-containing protein n=1 Tax=Aci... [more]
A0A2H6HH45_9BACT1.550e-1645.00RNA polymerase sigma-E factor n=1 Tax=bacterium BM... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 46..99
e-value: 6.5E-12
score: 43.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 15..101
e-value: 3.4E-18
score: 67.1
IPR013249RNA polymerase sigma factor 70, region 4 type 2PFAMPF08281Sigma70_r4_2coord: 46..95
e-value: 1.4E-15
score: 56.7
IPR039425RNA polymerase sigma-70 likePANTHERPTHR43133FAMILY NOT NAMEDcoord: 2..100
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 49..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118131contigM-pyrifera_M_contig118131:241..549 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118131.3755.1mRNA_M-pyrifera_M_contig118131.3755.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig118131 241..549 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig118131.3755.1 ID=prot_M-pyrifera_M_contig118131.3755.1|Name=mRNA_M-pyrifera_M_contig118131.3755.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRAL
RTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM
AP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014284RNA_pol_sigma-70_dom
IPR036388WH-like_DNA-bd_sf
IPR013249RNA_pol_sigma70_r4_t2
IPR039425RNA_pol_sigma-70
IPR013324RNA_pol_sigma_r3/r4-like