prot_M-pyrifera_M_contig11721.3557.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig11721.3557.1
Unique Nameprot_M-pyrifera_M_contig11721.3557.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length611
Homology
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BLAST of mRNA_M-pyrifera_M_contig11721.3557.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 7.760e-75
Identity = 186/431 (43.16%), Postives = 239/431 (55.45%), Query Frame = 0 
Query:  195 WDSNRWEATGSTAWLRATD-DGSAVGRGGGGKGGSAPNWKVPKAEMKEQQQVDSAPVPEWMPRQGGLGSENRQSVLPLPDGIDTSVKKLGVAGLEAMLKAKFSKMKGGVQFKDDDDDPDYYDPDDEGFEMDVEADLLVDTGGXXXXXXXXXXXXXXXXXXXAAAVQEFRGARRYDDPDRPXXXXXXXXXXXXXXXXXXXXXMRSPAKAS--------AAETGDETEASPVEP-------LASKKASRSAPTGGVGAGERVVDSSVARSPSELAGPAALVDVDDARGRKGGKKGAVGEGRTDDGSGRRRVEEXXXXXXXXXXXXAEEDKVKRAPKVSRGTTYTSVVSIATMPTLQRQGTVSFRDLGIDKEQLLANVNALGIKTPTEVQIAAIRGLVSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDSDAVQ 609
            WD++RWE+TGSTAW+ A + DGSA          S P+WKVPKAE  E  + +SAPVP+W+PRQGGLGSE+R+ V PLP+GIDTSVKKLGV GLEAMLK KFSK K GV F  +DD+ ++YDPDDEGFE  V+ + L                         AAVQ+FRGA RYDDP+ P                     MRSP++A+           TG   +ASP            +K ASRS  +           + +A            V  ++ +  + G    +G+                            +DK  ++  V R  TYT++ +IA M TL++Q + SFRDLGI    +L N+  LGI +PT+VQ++AIRGL+SEDRDVIIHAHTGSGKTLAYLLPLIAATDPDS+A+Q
Sbjct:  518 WDADRWESTGSTAWINAGEGDGSAXXXXX--XXXSLPSWKVPKAEQ-ETAKANSAPVPDWLPRQGGLGSESRRGVAPLPEGIDTSVKKLGVKGLEAMLKDKFSKTKDGV-FAAEDDEAEFYDPDDEGFEKLVDGEQLP---------LVESEDDVVGSVDVGAAVQDFRGAVRYDDPNAPRPKGLGVVARSEAEAAGGGFRMRSPSRAAXXXXXXXTTGSTGGGRDASPAVDDYDEDGSSGNKSASRSKGSXXXXXXXXXXXNGIAVXXXXXXXXXXAVLSEERKREQDGVAEKLGK----------------------------KDKKTKSQAVERKPTYTAI-NIADMETLEQQASFSFRDLGIQDRTVLKNIKKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDSNALQ 906
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BLAST of mRNA_M-pyrifera_M_contig11721.3557.1 vs. uniprot
Match: A0A4Y8AW72_9FLAO (DEAD/DEAH box helicase n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A4Y8AW72_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 1.400e-6
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 0 
Query:  538 SFRDLGIDKEQLLANVNALGIKTPTEVQIAAIRGLVSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDSDAVQ 609
            +F +LG+ KE  +  +  LGIKTPTEVQIA I  L+    D+I  A TG+GKT A+ LP++ A D +++ +Q
Sbjct:    3 TFLELGVHKE-FIKGLKELGIKTPTEVQIATIPVLLKSKTDLIGLAQTGTGKTAAFGLPILQAIDSNAENIQ 73
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BLAST of mRNA_M-pyrifera_M_contig11721.3557.1 vs. uniprot
Match: A0A1H2XI54_9FLAO (ATP-dependent RNA helicase DeaD n=1 Tax=Lutibacter oricola TaxID=762486 RepID=A0A1H2XI54_9FLAO)

HSP 1 Score: 58.2 bits (139), Expect = 2.400e-5
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 0 
Query:  538 SFRDLGIDKEQLLANVNALGIKTPTEVQIAAIRGLVSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDSDAVQ 609
            +F DLG+ KE +  ++N LGIK+PTE+Q AAI  L++   D I  A TG+GKT A+ LP++   D +S  VQ
Sbjct:    3 AFLDLGLRKEYV-KSLNELGIKSPTEIQQAAIPILLNSKVDFIGLAQTGTGKTAAFGLPILDKIDTNSGNVQ 73
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11721.3557.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4S8_ECTSI7.760e-7543.16DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A4Y8AW72_9FLAO1.400e-645.83DEAD/DEAH box helicase n=3 Tax=Flavobacteriaceae T... [more]
A0A1H2XI54_9FLAO2.400e-547.22ATP-dependent RNA helicase DeaD n=1 Tax=Lutibacter... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 484..510
NoneNo IPR availableGENE3D3.40.50.300coord: 482..609
e-value: 3.6E-19
score: 71.0
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 528..599
NoneNo IPR availablePANTHERPTHR24031:SF566ATP-DEPENDENT RNA HELICASE DBP7coord: 528..599
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 562..600
e-value: 4.6E-7
score: 29.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 531..601

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11721contigM-pyrifera_M_contig11721:82..9026 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11721.3557.1mRNA_M-pyrifera_M_contig11721.3557.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig11721 82..9026 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig11721.3557.1 ID=prot_M-pyrifera_M_contig11721.3557.1|Name=mRNA_M-pyrifera_M_contig11721.3557.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=611bp
GGGGGGGGGGGESARVRDGAELRMKRRDERERAEQERQAEFFANINRDDD
EEGGGEEDQTLRDVGDSSDGGGGGGGDSIFGDYFSKDQTSAPASAQQQNG
GGGGYGAERREETTRASGWDDQSSSRLTGRGAGRQGRGDSGGMSGREERG
QGGGSGRERDDRQGRGGGRQQQRRDGGGGRDEFDQYGETSGDRGWDSNRW
EATGSTAWLRATDDGSAVGRGGGGKGGSAPNWKVPKAEMKEQQQVDSAPV
PEWMPRQGGLGSENRQSVLPLPDGIDTSVKKLGVAGLEAMLKAKFSKMKG
GVQFKDDDDDPDYYDPDDEGFEMDVEADLLVDTGGGGGDEVAKAEVDVDV
NVDIAAAVQEFRGARRYDDPDRPRPTGSGVVARAEAEASGGGFRMRSPAK
ASAAETGDETEASPVEPLASKKASRSAPTGGVGAGERVVDSSVARSPSEL
AGPAALVDVDDARGRKGGKKGAVGEGRTDDGSGRRRVEEEEEEEEEEEEK
EAEEDKVKRAPKVSRGTTYTSVVSIATMPTLQRQGTVSFRDLGIDKEQLL
ANVNALGIKTPTEVQIAAIRGLVSEDRDVIIHAHTGSGKTLAYLLPLIAA
TDPDSDAVQV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase