prot_M-pyrifera_M_contig1170.3514.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig1170.3514.1
Unique Nameprot_M-pyrifera_M_contig1170.3514.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length438
Homology
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BLAST of mRNA_M-pyrifera_M_contig1170.3514.1 vs. uniprot
Match: D8LE74_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE74_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 2.090e-53
Identity = 144/376 (38.30%), Postives = 162/376 (43.09%), Query Frame = 0 
Query:    1 GSGRVRIQPIDTRIKLHMKQTQGMSMRSRANFGNTHMMASQPGPVSLSFTKLVESGLSFVEARKQVARATREAHQLFVREGERELATEMSFRDVLERARNAHTLGTATLSNKIERMHRREREQQAREMLEWNMQNAQNRGKKRSRTTSFRGVVASGSMVGTVHVPSGSTHPSAVTGSPKRSDASELSTGAEEETQYRRVCLSSSIDGRQHQKKSTYVVDETGRRETHTAERGKDSQGGEEEGHGXXXXXXXXXXXXXXXXXEERGGEETRRKGSGAGGRITNDVAFVLRKLYTGGGLDAQQQGWDRMPTDLFNTLTMQLGTLSKVNMPRNSLELLVSLRNPNFSCAHMRSVTEINLSGNKLRELPEEAQRLTSLRT 376
            GS R+RIQP+DTR++LH KQTQG SMRSR NFG THMMAS PGPV+LS  KLVESG+++VEARK++ARATREAHQ F REGE++LA EMSFRDV ERA+NAHTLGTATL+NKIERMHRR RE+Q                                                                                                                                                                                                        +NMPRNSLELL+SLRNPNFSCAHMRSV EINLSGNKLRELPEEAQRLTSL+T
Sbjct:   60 GSARIRIQPLDTRLRLHFKQTQGFSMRSRVNFGKTHMMASHPGPVNLSTAKLVESGMTYVEARKKIARATREAHQQFAREGEQQLAKEMSFRDVNERAQNAHTLGTATLTNKIERMHRRGRERQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKT 235
[Close]
BLAST of mRNA_M-pyrifera_M_contig1170.3514.1 vs. uniprot
Match: A0A836CM02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM02_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.360e-11
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 0 
Query:  283 DVAFVL---RKLYTGGGLDAQQQGWDRMPTDLFNTLTM--------------------QLGTLSKVNMPRNSLELLVSLRNPNFSCAHMRSVTEINLSGNKLRELPEEAQRLTSLRT 376
            D A +L   R+L T G LD  QQG   +P D+  TL +                    QLG L +VN+PRN L+ L+++ N   SCAH RSVT++NLSGN L  LP E  R  +L+T
Sbjct:  161 DAAQLLHGVRRLLTAGVLDLPQQGLAALPPDVSTTLALXXXXXXXXXXXXXXPCSDLQQLGGLRRVNLPRNELKQLLTVDNAALSCAHFRSVTDMNLSGNGLTALPAEMGRCVALQT 277
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1170.3514.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE74_ECTSI2.090e-5338.30Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A836CM02_9STRA2.360e-1141.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 119..139
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 348..435
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 322..435
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 348..370
e-value: 6.4
score: 14.8
coord: 417..438
e-value: 38.0
score: 8.5
coord: 394..416
e-value: 6.2
score: 15.0
coord: 371..393
e-value: 4.4
score: 16.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 292..438
e-value: 1.9E-24
score: 87.8
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 373..430
e-value: 5.1E-9
score: 35.8
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 373..395
score: 7.381
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 350..371
score: 6.403
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 396..418
score: 5.833
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 419..438
score: 5.517

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1170contigM-pyrifera_M_contig1170:16775..22989 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1170.3514.1mRNA_M-pyrifera_M_contig1170.3514.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig1170 16775..22990 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig1170.3514.1 ID=prot_M-pyrifera_M_contig1170.3514.1|Name=mRNA_M-pyrifera_M_contig1170.3514.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=438bp
GSGRVRIQPIDTRIKLHMKQTQGMSMRSRANFGNTHMMASQPGPVSLSFT
KLVESGLSFVEARKQVARATREAHQLFVREGERELATEMSFRDVLERARN
AHTLGTATLSNKIERMHRREREQQAREMLEWNMQNAQNRGKKRSRTTSFR
GVVASGSMVGTVHVPSGSTHPSAVTGSPKRSDASELSTGAEEETQYRRVC
LSSSIDGRQHQKKSTYVVDETGRRETHTAERGKDSQGGEEEGHGGKGGGG
GEGGGRGGEGGEERGGEETRRKGSGAGGRITNDVAFVLRKLYTGGGLDAQ
QQGWDRMPTDLFNTLTMQLGTLSKVNMPRNSLELLVSLRNPNFSCAHMRS
VTEINLSGNKLRELPEEAQRLTSLRTLRLDNNRLSGLPQGLLELTSLTSL
GLRHNNFSNLPYRFGDLRCLQTLDMGQNMLKTLPPTMA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt