prot_M-pyrifera_M_contig11687.3488.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig11687.3488.1
Unique Nameprot_M-pyrifera_M_contig11687.3488.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length258
Homology
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Match: A0A6H5JHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK5_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 4.580e-43
Identity = 146/320 (45.62%), Postives = 174/320 (54.37%), Query Frame = 0
Query:    1 MSRVSAMSPDEIAEAQMEIRSILTPASLEMLKRRGRAK--GTTDVSATKS------------------------RKSASALKPAAAAVAVTAPDTTAAAT----EISSGA------------------------------QAGAPTRAQRAATAAGGVDSEEALEAALLTLPPGERAKSSWTLSXXXXXXXXXXXXXXXXXXXXXSDGAEFM-EGDAAARAEARVDLDGVVVAVAAGKGPGA----------LHHHGDDPERAGYTPSELVRLARSTVAGQRQLALRALAGVLRGRAACIARGETPPHPRLPEMLPVAIR 249
            +SR+SAMSPDEIA+AQ EIR+ L P +LEML RRGR +  G      T +                         ++  A +  +  +A T+   + A T    + S+G                                +GAPT AQR      G+DS+EALEAALLTLPP ER KS WTL+           XXXXXXXXXX         GD     EARVDL+G VV +A                 LHHHGDDP++AGYTPSELVRLARSTV+GQRQLALRALAG+L+ RAACIARG+TPPH RLPEMLPVAIR
Sbjct:  279 LSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRGRAGGGKTAGCTSAPXXXXXXXXXXXXXXXXXXXXXXXEENHRAGRRRSPVLATTSHGESTAPTGDEGDRSNGGGPSRXXXXXXXXXXXXXXXXXAGXSPSRKTTSGAPTGAQRXXXXXXGIDSKEALEAALLTLPPEEREKSRWTLTAGGDAAVTAAEXXXXXXXXXXXXXXXXXGAGD-----EARVDLNGAVVVLAGXXXXXXXXXXXXXXXXLHHHGDDPDKAGYTPSELVRLARSTVSGQRQLALRALAGLLKVRAACIARGQTPPHRRLPEMLPVAIR 593          
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.160e-32
Identity = 123/259 (47.49%), Postives = 134/259 (51.74%), Query Frame = 0
Query:    1 MSRVSAMSPDEIAEAQMEIRSILTPASLEMLKRRGRAKGTTDVSATKSRKSASALKPAAAAVAVTAPDTTAAATEISSGAQAGAPTRAQRAATAAGGVDSEEALEAALLTLPPGERAKSSWTLSXXXXXXXXXXXXXXXXXXXXXSDGAEFMEGDAAARAEARVDLDGVVVAVA----------AGKGPGALHHHGDDPERAGYTPSELVRLARSTVAGQRQLALRALAGVLRGRAACIARGETPPHPRLPEMLPVAIR 249
            +SR+SAMSPDEIA+AQ EIR+ L P +LEML RRGR                                                                                AKS WTL+    XXXXXXXXXXXXXXXXX               EARVDLDG V               G+G  ALHHHGDDP++AGYTPSELVRLARSTV+GQRQLALRALAGVLR RAACIARG+TPPH RLPEMLPVAIR
Sbjct:  274 LSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRGXX-----------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKSRWTLTVSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXEARVDLDGAVXXXXXXXXXXXXXXGGEGLEALHHHGDDPDKAGYTPSELVRLARSTVSGQRQLALRALAGVLRFRAACIARGQTPPHRRLPEMLPVAIR 483          
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Match: A0A835YNX8_9STRA (RPAP1_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.150e-11
Identity = 48/87 (55.17%), Postives = 51/87 (58.62%), Query Frame = 0
Query:  163 RVDLDGVVVAVAAGKGPGALHHHGDDPERAGYTPSELVRLARSTVAGQRQLALRALAGVLRGRAACIARGETPPHPRLPEMLPVAIR 249
            RVD  G  V   A   P     HGD       TP ELV LARS V  QR+ ALRALAG+LR R A IA G  PPH RLPEMLP A+R
Sbjct:  176 RVDERGAAVPPRAS--PAEAPRHGDPHH---LTPDELVALARSDVPAQRRAALRALAGLLRARRAAIAAGAPPPHARLPEMLPAALR 257          
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Match: A0A813BUX8_9DINO (Rpap1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BUX8_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 2.220e-11
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0
Query:  182 LHHHGDDPERAGYTPSELVRLARSTVAGQRQLALRALAGVLRGRAACIARGETPPH------------PRLPEMLPVAIR 249
            LHHHGD PE AGYT  ELV LARSTV GQR LAL A+ G+L+ R A I R   PP             P +P++LPV +R
Sbjct:  250 LHHHGDAPEEAGYTLRELVGLARSTVGGQRTLALTAITGILQRRRAAIVRTYAPPGAAAPGPPADISPPLIPKVLPVILR 329          
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Match: K3X1P0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1P0_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 5.360e-7
Identity = 87/269 (32.34%), Postives = 115/269 (42.75%), Query Frame = 0
Query:    2 SRVSAMSPDEIAEAQMEIRSILTPASLE-MLKRRGRAKGTTDV---SATKSRKSASALKPAAAAVAVTAPDTTAAATEISSGAQAGAPTRAQRAATAAGGVDSEEALEAALLTLPPGERAKSSWTLSXXXXXXXXXXXXXXXXXXXXXSDGAEFMEGDAA---ARAEA------RVDLDGVVVAVAAGKGP------GALHHHGDDPERAGYTPSELVRLARSTVAGQRQLALRALAGVLRGRAACIARGE-TPPHPR-LPEMLPVAIR 249
            +R+  MS DEI EAQ E+   L P  LE  + +R +A         SA K+R +A+    A     VT  D      E +S     AP    +       + SEE L      LPP ERAK  W  +                     +  +   +GDA    AR E       R D +G  + V+ G G         L HHGDDP+ AGYT SEL+ LARSTV+ QR +AL  +  +L+ R         T   PR LP  LP+ +R
Sbjct:  174 ARLQEMSLDEIREAQQELMRSLDPTLLEKFMNKRKKAPAAVKKPAESAAKTRTNAAGTTVAIGKSVVTNNDEGEQKEEAASDQPPAAPIDLAK-------IKSEEQLFETAKLLPPEERAKHEWMQAVPDASASA-------------APSSATTKGDATKANARKEKLTATTERFDFNGDRI-VSGGDGGVQHATHSGLFHHGDDPDAAGYTMSELIHLARSTVSSQRAMALTTITKILQKRIVYQQEQNLTNVFPRVLPTNLPITLR 421          
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Match: A0A0R3TWG1_RODNA (Uncharacterized protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3TWG1_RODNA)

HSP 1 Score: 60.5 bits (145), Expect = 7.540e-7
Identity = 42/91 (46.15%), Postives = 50/91 (54.95%), Query Frame = 0
Query:  162 ARVDLDGVVVAVAAGKGPGA-------LHHHGDDPERAGYTPSELVRLARSTVAGQRQLALRALAGVLRGRAACIARGETPPHPRLPEMLP 245
            AR DL+G VV       PGA       LHHHG++PER GYT SEL  LA ST   QR++AL +LA  L    A   RG    H  +P +LP
Sbjct:  310 ARFDLEGRVVP------PGANIPMHLGLHHHGEEPERGGYTISELFHLASSTHPNQRRIALSSLAAAL----AASRRGYHATHLAIPSLLP 390          
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Match: T0PPP8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PPP8_SAPDV)

HSP 1 Score: 59.3 bits (142), Expect = 2.240e-6
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 0
Query:  163 RVDLDGVVVAVAAGKGP---GALHHHGDDPERAGYTPSELVRLARSTVAGQRQLALRALAGVLR 223
            RVD DG V+    G  P     L+HHGDDP+R GYT  ELV LARSTVA QR +A   L  VLR
Sbjct:  221 RVDFDGHVLPATDGLLPPSHSGLYHHGDDPDRPGYTIEELVLLARSTVASQRVVACTVLGKVLR 284          
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Match: A0A820S0L4_9BILA (Hypothetical protein (Fragment) n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820S0L4_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 5.720e-6
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 0
Query:  181 ALHHHGDDPERAGYTPSELVRLARSTVAGQRQLALRALAGVLRGRAACIARGETPPHPRLPEMLPVAIRYL 251
            ALHHHG++PE AGYT  EL  L+RSTV  QR +AL+ L+ ++R     I   +    P +P+++   I +L
Sbjct:   12 ALHHHGEEPEAAGYTLDELFHLSRSTVLQQRVIALQTLSNIIRQAHTGIYDHDLQ-IPLIPKLIEAGILFL 81          
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Match: A0A2R5GBM8_9STRA (RNA polymerase II-associated protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBM8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.010e-5
Identity = 74/249 (29.72%), Postives = 98/249 (39.36%), Query Frame = 0
Query:    4 VSAMSPDEIAEAQMEIRSILTPASLE--MLKRRGRAKGTTDVSATKSRKSASALKPAAAAVAVTAPDTTAAATEISSGAQAGAPTRAQRAATAAGGVDSEEALEAALLTLPPGERAKSSWTLSXXXXXXXXXXXXXXXXXXXXXSDGAEFMEGDAAARAEA---------RVDLDGVVVAVAAGKGP------GALHHHGDDPERAGYTPSELVRLARSTVAGQRQLALRALAGVLRGRAACIARGETP 235
            +  MSP +IAEAQ EIR+   P  LE  M K  G            + K AS   PA               T+ ++  Q  A    +        + +EE L+ A+  LP  ER K  WT                       +  A    G A +   A         R DL+G  +  +  +         AL+HHGD+PERAGYT  EL  LARS  A Q+ LAL  +A +LR R   +    TP
Sbjct:  221 IDRMSPSQIAEAQDEIRAQFDPEILERFMAKMNG-----------SNAKKASENAPA---------------TQDTAAQQRAAREEREAKLKDLSWIRTEEQLDEAVNMLPVREREKLRWTGRIKGPAPTFGPANVDEEESEDLATRAGMQPGGAESLMSADFRTSIESARFDLEGNFIPPSTDEEAQLSGHHSALYHHGDEPERAGYTIIELTHLARSKAAAQKTLALSCIAKILRKRHVSLYGEGTP 443          
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Match: A0A2H1C6V7_FASHE (RPAP1-like protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1C6V7_FASHE)

HSP 1 Score: 57.0 bits (136), Expect = 1.070e-5
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 0
Query:  161 EARVDLDGVVVAVAAGKGPG-ALHHHGDDPERAGYTPSELVRLARSTVAGQRQLALRALAGVLRGRAACIARGETPPH 237
            +AR DL+G V+   A       LHHHG++PERAGYT  EL  LARS+V  QR+LAL     +L    A   RG   PH
Sbjct:   58 QARFDLNGFVIPPEAVLDVHLGLHHHGEEPERAGYTVGELFHLARSSVPAQRRLAL----AILTSSLAQSRRGRHVPH 131          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11687.3488.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHK5_9PHAE4.580e-4345.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHI7_ECTSI1.160e-3247.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNX8_9STRA2.150e-1155.17RPAP1_C domain-containing protein n=1 Tax=Tribonem... [more]
A0A813BUX8_9DINO2.220e-1152.50Rpap1 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
K3X1P0_GLOUD5.360e-732.34Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0R3TWG1_RODNA7.540e-746.15Uncharacterized protein n=1 Tax=Rodentolepis nana ... [more]
T0PPP8_SAPDV2.240e-656.25Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A820S0L4_9BILA5.720e-642.25Hypothetical protein (Fragment) n=1 Tax=Adineta st... [more]
A0A2R5GBM8_9STRA1.010e-529.72RNA polymerase II-associated protein 1 n=1 Tax=Hon... [more]
A0A2H1C6V7_FASHE1.070e-547.44RPAP1-like protein n=1 Tax=Fasciola hepatica TaxID... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013929RNA polymerase II-associated protein 1, C-terminalPFAMPF08620RPAP1_Ccoord: 162..223
e-value: 5.2E-19
score: 68.1
IPR013930RNA polymerase II-associated protein 1, N-terminalPFAMPF08621RPAP1_Ncoord: 2..38
e-value: 2.9E-9
score: 36.5
IPR039913RNA polymerase II-associated protein RPAP1/Rba50PANTHERPTHR21483FAMILY NOT NAMEDcoord: 2..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11687contigM-pyrifera_M_contig11687:697..2146 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11687.3488.1mRNA_M-pyrifera_M_contig11687.3488.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig11687 697..2167 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig11687.3488.1 ID=prot_M-pyrifera_M_contig11687.3488.1|Name=mRNA_M-pyrifera_M_contig11687.3488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=258bp
MSRVSAMSPDEIAEAQMEIRSILTPASLEMLKRRGRAKGTTDVSATKSRK
SASALKPAAAAVAVTAPDTTAAATEISSGAQAGAPTRAQRAATAAGGVDS
EEALEAALLTLPPGERAKSSWTLSSDTAAASMEEHEGGGGGGGGGSDGAE
FMEGDAAARAEARVDLDGVVVAVAAGKGPGALHHHGDDPERAGYTPSELV
RLARSTVAGQRQLALRALAGVLRGRAACIARGETPPHPRLPEMLPVAIRY
LTGTLKR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013929RNA_pol_II_AP1_C
IPR013930RNA_pol_II_AP1_N
IPR039913RPAP1/Rba50