prot_M-pyrifera_M_contig115634.3240.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig115634.3240.1
Unique Nameprot_M-pyrifera_M_contig115634.3240.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length126
Homology
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A6A0H9G5_HYAAZ (HELICc2 domain-containing protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H9G5_HYAAZ)

HSP 1 Score: 147 bits (372), Expect = 1.110e-42
Identity = 69/122 (56.56%), Postives = 97/122 (79.51%), Query Frame = 0
Query:    3 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESLA 124
            P +Y+       RL+YLRDQ +IR++DFL FDAMR  AQCVGR +RGK+DYG+++FAD+R+ RADKR+KLP+WI ++L  +  NLST+ AV L R +LR+MAQP ++ED++G+SLLTKE ++
Sbjct:   52 PFMYTQSRILKARLEYLRDQFNIRENDFLTFDAMRHAAQCVGRAMRGKTDYGILLFADKRFARADKRSKLPKWIQEHLADNKCNLSTEEAVQLCRPWLRQMAQPFTREDQLGISLLTKEQIS 173          
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A8D8YRE5_9HEMI (TFIIH basal transcription factor complex helicase XPD subunit n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8YRE5_9HEMI)

HSP 1 Score: 143 bits (360), Expect = 1.240e-41
Identity = 69/112 (61.61%), Postives = 92/112 (82.14%), Query Frame = 0
Query:   15 RLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESLAKR 126
            RL+YLRDQ  IR++DFL FDAMR  AQCVGRVIRGK+DYG+MIFAD+R+ R+DKR+KLP+WI +YL  +  NLST+ AV L + FLR+MAQP ++ED +GV+LL+ + L ++
Sbjct:    4 RLEYLRDQYQIRENDFLTFDAMRHAAQCVGRVIRGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRFLRQMAQPFTREDMLGVALLSLDQLLEK 115          
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A6B2LA38_9EUKA (HELICc2 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LA38_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 1.660e-41
Identity = 72/124 (58.06%), Postives = 92/124 (74.19%), Query Frame = 0
Query:    3 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESLAKR 126
            P +Y+       RL++L+ +  I + +FL FDAMRT AQCVGRVIRGK+DYG+M+FAD R+NR DKR+KLPQWI QYL  +HLNLSTDVAV +   FLREM Q   KED++GVSL T + + K+
Sbjct:  181 PYVYTESRVLKARLEFLKKKYRIEEGEFLTFDAMRTAAQCVGRVIRGKTDYGIMVFADNRFNRIDKRSKLPQWILQYLSPAHLNLSTDVAVSMASDFLREMGQAVDKEDQMGVSLWTLKDVEKQ 304          
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A0P4W6G4_SCYOL (General transcription and DNA repair factor IIH helicase subunit XPD n=3 Tax=Heterotremata TaxID=116706 RepID=A0A0P4W6G4_SCYOL)

HSP 1 Score: 154 bits (388), Expect = 5.070e-41
Identity = 74/121 (61.16%), Postives = 98/121 (80.99%), Query Frame = 0
Query:    3 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESL 123
            P +Y+       RL+YLRDQ +IR++DFL FDAMR  AQCVGRV+RGK+DYG+M+FAD+R++RADKRNKLP+WI +YL+ S  NLST+ AV L R +LR+MAQP +++D++GVSLLT E L
Sbjct:  621 PFMYTQSRILKARLEYLRDQFNIRENDFLTFDAMRHAAQCVGRVMRGKTDYGIMLFADQRFSRADKRNKLPRWIQEYLMDSKCNLSTEEAVQLTRPWLRQMAQPFTRDDQLGVSLLTLEQL 741          
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: UPI001B7D9FC6 (general transcription and DNA repair factor IIH helicase subunit XPD-like n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7D9FC6)

HSP 1 Score: 147 bits (371), Expect = 5.120e-41
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 0
Query:    3 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESL 123
            P +Y+       RL+YLRDQ  IR++DFL FDAMR  AQCVGRVIRGK+DYG+MIFAD+RY RADKR KLP+WI +++  S LNL+ D  V L + FLR+MAQP  KED++G+SLLT + L
Sbjct:  184 PYVYTQSRLLKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRVIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHITDSSLNLTIDETVQLSKHFLRDMAQPFRKEDQLGLSLLTLDQL 304          
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A0S7KD64_9TELE (ERCC2 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KD64_9TELE)

HSP 1 Score: 143 bits (360), Expect = 9.200e-41
Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 0
Query:    3 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESL 123
            P +Y+       RL+YLRDQ  IR++DFL FDAMR  AQCVGR IRGK+DYG+M+FAD+RY R+DKR KLP+WI +++    LNL+ D AV L + FLR+MAQP  +ED++G+SLLT E L
Sbjct:   61 PYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRYARSDKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHFLRQMAQPFRQEDQLGLSLLTLEQL 181          
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: ERCC2_DICDI (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=ERCC2_DICDI)

HSP 1 Score: 152 bits (385), Expect = 1.400e-40
Identity = 72/112 (64.29%), Postives = 93/112 (83.04%), Query Frame = 0
Query:   15 RLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESLAKR 126
            RL++LRD+  IR+++FL FDAMRT +QCVGRVIRGKSDYG+MIFAD+RYNR DKRNKLPQWI Q+    HLNLSTD+A+ L ++FLREM QP S+E+++G SL + E + K+
Sbjct:  629 RLEFLRDRYQIRENEFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKLPQWILQFCQPQHLNLSTDMAISLSKTFLREMGQPFSREEQLGKSLWSLEHVEKQ 740          
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A151ZH66_9MYCE (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZH66_9MYCE)

HSP 1 Score: 152 bits (385), Expect = 1.410e-40
Identity = 72/112 (64.29%), Postives = 92/112 (82.14%), Query Frame = 0
Query:   15 RLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESLAKR 126
            RL+YLRD   IR+++FL FDAMRT +QCVGRVIRGK+DYG+MIFAD+RYNR DKRNKLPQWI Q++   HLNLSTD+A+ L R+FLREM QP ++E ++G SL + E + K+
Sbjct:  630 RLEYLRDNMQIRENEFLTFDAMRTASQCVGRVIRGKTDYGIMIFADKRYNRLDKRNKLPQWILQFVQPQHLNLSTDMAINLSRNFLREMGQPYTRESQLGKSLWSIEHIEKQ 741          
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: UPI0015A87E49 (general transcription and DNA repair factor IIH helicase subunit XPD-like isoform X1 n=2 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A87E49)

HSP 1 Score: 140 bits (354), Expect = 1.650e-40
Identity = 66/109 (60.55%), Postives = 88/109 (80.73%), Query Frame = 0
Query:   15 RLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESL 123
            RL+YLRDQ  IR+SDFL FDA+R  +QCVGR IRGK+DYG+MIFAD+R++R DK  KLP+WI +YL +S  NLS + AV + + FL++MAQP ++ED++G+SLLT E L
Sbjct:    8 RLEYLRDQFQIRESDFLTFDALRHASQCVGRAIRGKTDYGIMIFADKRFSRVDKYGKLPKWIQEYLTESFHNLSIEEAVQIAKRFLKQMAQPFTREDQLGISLLTLEQL 116          
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A8J5K1R1_HOMAM (General transcription and DNA repair factor IIH helicase subunit XPD n=3 Tax=Astacidea TaxID=6712 RepID=A0A8J5K1R1_HOMAM)

HSP 1 Score: 152 bits (384), Expect = 1.770e-40
Identity = 74/121 (61.16%), Postives = 97/121 (80.17%), Query Frame = 0
Query:    3 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESL 123
            P +Y+       RL+YLRDQ +IR+SDFL FDAMR  AQCVGRV+RGK+DYG+M+FAD+R+ RADKRNKLP+WI ++LV S  NLST+ AV + R +LR+MAQP +++D++GVSLLT E L
Sbjct:  616 PFMYTQSRILKARLEYLRDQFNIRESDFLTFDAMRHAAQCVGRVMRGKTDYGIMLFADKRFARADKRNKLPRWIQEHLVDSKCNLSTEEAVQVTRPWLRQMAQPFTRDDQLGVSLLTLEQL 736          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A0H9G5_HYAAZ1.110e-4256.56HELICc2 domain-containing protein n=1 Tax=Hyalella... [more]
A0A8D8YRE5_9HEMI1.240e-4161.61TFIIH basal transcription factor complex helicase ... [more]
A0A6B2LA38_9EUKA1.660e-4158.06HELICc2 domain-containing protein n=1 Tax=Arcella ... [more]
A0A0P4W6G4_SCYOL5.070e-4161.16General transcription and DNA repair factor IIH he... [more]
UPI001B7D9FC65.120e-4160.33general transcription and DNA repair factor IIH he... [more]
A0A0S7KD64_9TELE9.200e-4157.85ERCC2 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
ERCC2_DICDI1.400e-4064.29General transcription and DNA repair factor IIH he... [more]
A0A151ZH66_9MYCE1.410e-4064.29General transcription and DNA repair factor IIH he... [more]
UPI0015A87E491.650e-4060.55general transcription and DNA repair factor IIH he... [more]
A0A8J5K1R1_HOMAM1.770e-4061.16General transcription and DNA repair factor IIH he... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001945RAD3/XPD familyPRINTSPR00852XRODRMPGMNTDcoord: 15..37
score: 68.32
coord: 86..106
score: 58.5
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 3..125
NoneNo IPR availableGENE3D3.40.50.300coord: 6..81
e-value: 1.8E-12
score: 49.2
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 3..125
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 15..78
e-value: 6.5E-15
score: 55.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115634contigM-pyrifera_M_contig115634:186..563 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115634.3240.1mRNA_M-pyrifera_M_contig115634.3240.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig115634 186..563 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig115634.3240.1 ID=prot_M-pyrifera_M_contig115634.3240.1|Name=mRNA_M-pyrifera_M_contig115634.3240.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MCPSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGK
SDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFL
REMAQPTSKEDEIGVSLLTKESLAKR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001945RAD3/XPD
IPR006555ATP-dep_Helicase_C