prot_M-pyrifera_M_contig114775.3065.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig114775.3065.1
Unique Nameprot_M-pyrifera_M_contig114775.3065.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length189
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Match: A0A2E7C479_9GAMM (Peptidoglycan D,D-transpeptidase MrdA n=9 Tax=Halieaceae TaxID=1706372 RepID=A0A2E7C479_9GAMM)

HSP 1 Score: 372 bits (955), Expect = 3.840e-124
Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0 
Query:    1 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSADYKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 189
            GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDF+LQQTAL ALGEQRGAVVAIDP  GGVLALVSTPGFDTNLFVNGISSADY+ALR SPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPE+TV DPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD
Sbjct:  202 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFELQQTALEALGEQRGAVVAIDPWTGGVLALVSTPGFDTNLFVNGISSADYQALRNSPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPETTVPDPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Match: A0A2D5F7B8_9GAMM (Peptidoglycan D,D-transpeptidase MrdA n=2 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5F7B8_9GAMM)

HSP 1 Score: 347 bits (889), Expect = 3.490e-114
Identity = 162/189 (85.71%), Postives = 177/189 (93.65%), Query Frame = 0 
Query:    1 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSADYKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 189
            GKVGVE++YED+LHGEVGYQNVETNAHGRVLRVLERFDP PG D+ LHLD+QLQQ A  ALGEQRGAVVAIDP  GGVLALVSTPGFD+NLFVNGIS+ DY ALR+SPDVPLFNRA+QGQYPPGST+KPMMA+AGLQAGL+TPE+TV DPGWY LPGDSRRYRDWILKIRGTGHAPRVD+HMA+AESCD
Sbjct:  202 GKVGVERYYEDVLHGEVGYQNVETNAHGRVLRVLERFDPRPGEDLVLHLDYQLQQAAERALGEQRGAVVAIDPATGGVLALVSTPGFDSNLFVNGISTEDYAALRDSPDVPLFNRAVQGQYPPGSTIKPMMALAGLQAGLITPETTVPDPGWYRLPGDSRRYRDWILKIRGTGHAPRVDLHMAIAESCD 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Match: A0A5C9A635_9GAMM (Peptidoglycan D,D-transpeptidase MrdA n=2 Tax=Parahaliea TaxID=1857932 RepID=A0A5C9A635_9GAMM)

HSP 1 Score: 344 bits (883), Expect = 2.560e-113
Identity = 163/189 (86.24%), Postives = 176/189 (93.12%), Query Frame = 0 
Query:    1 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSADYKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 189
            GKVGVEK+YEDLLHGEVGYQNVETNAHGRVLRVLERFDP PGAD+ LHLD  LQ+ A  ALG+QRGAVVA+DP  GGVLALVSTPG+D+NLFVNGISSADY ALR+SPDVPLFNRA+QGQYPPGST+KPMMAMAGL++GLVTPE TV DPGWYSLPGDSRRYRDWILKIRGTGHAPRVDM MA+AESCD
Sbjct:  202 GKVGVEKYYEDLLHGEVGYQNVETNAHGRVLRVLERFDPKPGADLVLHLDIGLQRVAFDALGDQRGAVVAMDPATGGVLALVSTPGYDSNLFVNGISSADYSALRDSPDVPLFNRAVQGQYPPGSTIKPMMAMAGLKSGLVTPEYTVPDPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMEMAIAESCD 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Match: A0A7W2TWH4_9GAMM (Peptidoglycan D,D-transpeptidase MrdA n=1 Tax=Sediminihaliea albiluteola TaxID=2758564 RepID=A0A7W2TWH4_9GAMM)

HSP 1 Score: 343 bits (879), Expect = 1.020e-112
Identity = 162/189 (85.71%), Postives = 177/189 (93.65%), Query Frame = 0 
Query:    1 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSADYKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 189
            GK+GVE++YED+LHGEVGYQNVETNAHGRVLRVLERFDP PGAD+TLHLD +LQ+TA  ALGEQRGAVVA+D   GGVLALVSTPGFD+NLFVNGISSADY ALR+SPDVPLFNRA+QGQYPPGSTVKPMMA+AGL++GLVTPE TVADPGWY LPGDSRRYRDWILKIRGTGHAPRV M MA+AESCD
Sbjct:  202 GKIGVERYYEDILHGEVGYQNVETNAHGRVLRVLERFDPRPGADLTLHLDIELQRTAYEALGEQRGAVVALDTATGGVLALVSTPGFDSNLFVNGISSADYSALRDSPDVPLFNRAVQGQYPPGSTVKPMMALAGLKSGLVTPEYTVADPGWYRLPGDSRRYRDWILKIRGTGHAPRVAMEMAIAESCD 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Match: UPI0019D3F431 (penicillin-binding protein 2 n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D3F431)

HSP 1 Score: 342 bits (877), Expect = 1.990e-112
Identity = 162/189 (85.71%), Postives = 175/189 (92.59%), Query Frame = 0 
Query:    1 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSADYKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 189
            GKVGVEKFYED LHG+VGYQNVETNAHGRVLRVLER+DP PGAD+TLHLD  LQ+TA  ALGEQRGAVVA+DP  GGVLALVSTPGFDTNLFVNGISSADY ALR+SPDVPLFNRA+QGQYPPGST+KP+MA+AGL++GLVTPE TV DPGWY LPGDSRRYRDWILKIRGTGHAPRVD+ MAV ESCD
Sbjct:  202 GKVGVEKFYEDTLHGDVGYQNVETNAHGRVLRVLERYDPTPGADLTLHLDIALQRTAHEALGEQRGAVVAMDPKSGGVLALVSTPGFDTNLFVNGISSADYGALRDSPDVPLFNRAVQGQYPPGSTIKPLMALAGLESGLVTPEYTVPDPGWYRLPGDSRRYRDWILKIRGTGHAPRVDLEMAVEESCD 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Match: A0A2N5Y6T6_9GAMM (Peptidoglycan D,D-transpeptidase MrdA n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y6T6_9GAMM)

HSP 1 Score: 332 bits (850), Expect = 1.830e-108
Identity = 157/189 (83.07%), Postives = 170/189 (89.95%), Query Frame = 0 
Query:    1 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSADYKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 189
            GKVGVE FYE++LHGEVGYQNVETNAHGRVLRVLER DPVPGAD+TLHLDF LQ+TA  ALGEQRGAVVAIDP  GGVLALVSTPGFD NLF NGIS ADY  LR+SPD+PLFNRA+QGQYPPGST+KPMMAMAGL +GLVT E+TV DPGWY LPG+SRRYRDWILKIRGTGHAP V + MA+AESCD
Sbjct:  202 GKVGVENFYENMLHGEVGYQNVETNAHGRVLRVLERHDPVPGADVTLHLDFDLQKTAFEALGEQRGAVVAIDPKTGGVLALVSTPGFDANLFANGISGADYSLLRDSPDMPLFNRAVQGQYPPGSTIKPMMAMAGLGSGLVTTETTVPDPGWYRLPGNSRRYRDWILKIRGTGHAPHVALEMAIAESCD 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Match: A0A661HBH7_9GAMM (Peptidoglycan D,D-transpeptidase MrdA n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A661HBH7_9GAMM)

HSP 1 Score: 331 bits (848), Expect = 3.950e-108
Identity = 156/189 (82.54%), Postives = 174/189 (92.06%), Query Frame = 0 
Query:    1 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSADYKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 189
            GKVGVEK+YED+LHGEVGYQNVE+NAHGRVLRVLER  P PG D+TLHLD ++QQ A+ ALG++RGAVVAI PL GGVLALVSTPGFD NLFVNGISS DY ALR+S DVPLFNRAIQGQYPPGSTVKP+M+MAGL++GLVTPESTVADPGWY LPGD R+YRDWIL+IRGTGHAPRVDM+MA+AESCD
Sbjct:  202 GKVGVEKYYEDILHGEVGYQNVESNAHGRVLRVLERHAPTPGIDLTLHLDIRVQQAAVDALGDRRGAVVAIHPLTGGVLALVSTPGFDANLFVNGISSVDYSALRDSLDVPLFNRAIQGQYPPGSTVKPIMSMAGLESGLVTPESTVADPGWYKLPGDKRKYRDWILRIRGTGHAPRVDMNMAIAESCD 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Match: B7S322_9GAMM (Peptidoglycan D,D-transpeptidase MrdA n=1 Tax=marine gamma proteobacterium HTCC2148 TaxID=247634 RepID=B7S322_9GAMM)

HSP 1 Score: 330 bits (847), Expect = 5.590e-108
Identity = 154/189 (81.48%), Postives = 171/189 (90.48%), Query Frame = 0 
Query:    1 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSADYKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 189
            GK+GVEKFYE +LHG VGYQNVETNAHGRVLRVLER+ P PG D+TLHLD ++Q+ A  ALG++RGAVVAIDPL GG+LALVSTPGFDTNLFVNGISS DY ALR+S DVPLFNRA+QGQYPPGST+KPMMAMAGL++GLVTPESTV DPGWY LPGDS RYRDWIL+IRGTGHAP VDM MA+AESCD
Sbjct:  202 GKIGVEKFYEQMLHGAVGYQNVETNAHGRVLRVLERYSPKPGVDLTLHLDIEVQKAAFDALGDRRGAVVAIDPLTGGILALVSTPGFDTNLFVNGISSKDYSALRDSLDVPLFNRAVQGQYPPGSTIKPMMAMAGLESGLVTPESTVPDPGWYRLPGDSHRYRDWILRIRGTGHAPEVDMKMAIAESCD 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Match: UPI00167B443A (penicillin-binding protein 2 n=1 Tax=Halioglobus pacificus TaxID=930806 RepID=UPI00167B443A)

HSP 1 Score: 329 bits (843), Expect = 2.000e-107
Identity = 154/189 (81.48%), Postives = 170/189 (89.95%), Query Frame = 0 
Query:    1 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSADYKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 189
            GKVG+EK+YED LHGEVGYQNVETNAHGRVLRVLER+ P PG D+TLHLD  LQ+TA  ALGEQRGAVVAIDP  GGV+ALVSTPGFDTNLFVNGISSA+Y  LR+S DVPLFNRA+QGQYPPGSTVKPMM +AGL++GLVT ++TV DPGWY LPGDSRRYRDWILKIRGTGHAP VD+HMA+ ESCD
Sbjct:  202 GKVGIEKYYEDTLHGEVGYQNVETNAHGRVLRVLERYAPTPGEDLTLHLDINLQRTAYEALGEQRGAVVAIDPKTGGVMALVSTPGFDTNLFVNGISSANYSELRDSLDVPLFNRAVQGQYPPGSTVKPMMGLAGLESGLVTAQTTVPDPGWYRLPGDSRRYRDWILKIRGTGHAPEVDLHMAIVESCD 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Match: A0A3L7DWU3_9GAMM (Peptidoglycan D,D-transpeptidase MrdA n=2 Tax=Seongchinamella TaxID=2919372 RepID=A0A3L7DWU3_9GAMM)

HSP 1 Score: 328 bits (840), Expect = 6.280e-107
Identity = 155/189 (82.01%), Postives = 170/189 (89.95%), Query Frame = 0 
Query:    1 GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLDFQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSADYKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADPGWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD 189
            GKVGVEK+YED LHG VGYQNVETNAHGRVLRVLER  PVPG D+TLHLD ++Q+ A  ALGEQRGAVVAIDPL GGVLALVSTPGFD+NLFVNGISS DY ALR+SPDVPLFNRA+QGQYPPGST+KPMM MAGL++GLVTPE+TV DPGWY LPGDS RYRDWIL+IRGTGHAP V + MA+AESCD
Sbjct:  202 GKVGVEKYYEDQLHGSVGYQNVETNAHGRVLRVLERHLPVPGDDLTLHLDIEVQKAAYEALGEQRGAVVAIDPLTGGVLALVSTPGFDSNLFVNGISSKDYSALRDSPDVPLFNRAVQGQYPPGSTIKPMMGMAGLESGLVTPETTVPDPGWYRLPGDSHRYRDWILRIRGTGHAPEVALKMAIAESCD 390
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114775.3065.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7C479_9GAMM3.840e-12495.77Peptidoglycan D,D-transpeptidase MrdA n=9 Tax=Hali... [more]
A0A2D5F7B8_9GAMM3.490e-11485.71Peptidoglycan D,D-transpeptidase MrdA n=2 Tax=Hali... [more]
A0A5C9A635_9GAMM2.560e-11386.24Peptidoglycan D,D-transpeptidase MrdA n=2 Tax=Para... [more]
A0A7W2TWH4_9GAMM1.020e-11285.71Peptidoglycan D,D-transpeptidase MrdA n=1 Tax=Sedi... [more]
UPI0019D3F4311.990e-11285.71penicillin-binding protein 2 n=1 Tax=Parahaliea me... [more]
A0A2N5Y6T6_9GAMM1.830e-10883.07Peptidoglycan D,D-transpeptidase MrdA n=1 Tax=Kine... [more]
A0A661HBH7_9GAMM3.950e-10882.54Peptidoglycan D,D-transpeptidase MrdA n=3 Tax=Gamm... [more]
B7S322_9GAMM5.590e-10881.48Peptidoglycan D,D-transpeptidase MrdA n=1 Tax=mari... [more]
UPI00167B443A2.000e-10781.48penicillin-binding protein 2 n=1 Tax=Halioglobus p... [more]
A0A3L7DWU3_9GAMM6.280e-10782.01Peptidoglycan D,D-transpeptidase MrdA n=2 Tax=Seon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005311Penicillin-binding protein, dimerisation domainPFAMPF03717PBP_dimercoord: 1..34
e-value: 1.6E-6
score: 28.6
IPR001460Penicillin-binding protein, transpeptidasePFAMPF00905Transpeptidasecoord: 66..189
e-value: 1.8E-22
score: 80.0
NoneNo IPR availableGENE3D3.90.1310.30coord: 1..53
e-value: 1.3E-11
score: 46.8
NoneNo IPR availableGENE3D3.40.710.10coord: 54..189
e-value: 4.1E-38
score: 133.2
NoneNo IPR availablePANTHERPTHR30627PENICILLIN-BINDING PROTEIN 2coord: 1..189
NoneNo IPR availablePANTHERPTHR30627:SF2PEPTIDOGLYCAN D,D-TRANSPEPTIDASE MRDAcoord: 1..189
IPR012338Beta-lactamase/transpeptidase-likeSUPERFAMILY56601beta-lactamase/transpeptidase-likecoord: 1..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114775contigM-pyrifera_M_contig114775:2..568 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114775.3065.1mRNA_M-pyrifera_M_contig114775.3065.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig114775 2..568 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig114775.3065.1 ID=prot_M-pyrifera_M_contig114775.3065.1|Name=mRNA_M-pyrifera_M_contig114775.3065.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp
GKVGVEKFYEDLLHGEVGYQNVETNAHGRVLRVLERFDPVPGADITLHLD
FQLQQTALAALGEQRGAVVAIDPLDGGVLALVSTPGFDTNLFVNGISSAD
YKALRESPDVPLFNRAIQGQYPPGSTVKPMMAMAGLQAGLVTPESTVADP
GWYSLPGDSRRYRDWILKIRGTGHAPRVDMHMAVAESCD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005311PBP_dimer
IPR001460PCN-bd_Tpept
IPR012338Beta-lactam/transpept-like