prot_M-pyrifera_M_contig1140.2906.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig1140.2906.1
Unique Nameprot_M-pyrifera_M_contig1140.2906.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length240
Homology
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BLAST of mRNA_M-pyrifera_M_contig1140.2906.1 vs. uniprot
Match: A0A6H5JTB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB3_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.000e-42
Identity = 96/164 (58.54%), Postives = 111/164 (67.68%), Query Frame = 0 
Query:    1 MGTGASLDRSGLAALGVFEVADLVSGSWLPEYRQASIDYGIDGEMLIRLPRDQLADALRRAGVESNDDLEFLLGELDNIRSPMIDSGKLDRENLRELLPQLDQQSSYGLGEGSDTSDWSGVSVNKYGRITALNVANRGLSGELPAALGDVSHLEHLHATSNCFA 164
            MG   SL+   L AL V E+ADL      PE+RQASID+GIDG ML  LP DQL DAL RAGVE    L +LL E++NIR P ID  KLDRENLR +L + D      L   S  S+WSGVSV+   RI ALNV NR LSGELPAAL ++S+LE+LHATSN FA
Sbjct:    1 MGVAMSLEE--LGALSVVELADLAP----PEHRQASIDFGIDGHMLTSLPLDQLQDALARAGVEDKQHLVYLLEEIENIRRPKIDPSKLDRENLRAILERSDSGDHEEL---SGRSEWSGVSVDSDDRIIALNVTNRHLSGELPAALFEISNLEYLHATSNLFA 155
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BLAST of mRNA_M-pyrifera_M_contig1140.2906.1 vs. uniprot
Match: D7FPI3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI3_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 5.920e-15
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:   79 IRSPMIDSGKLDRENLRELLPQLDQQSSYGLGEGSDTSDWSGVSVNKYGRITALNVANRGLSGELPAALGDVSHLEHLHA 158
            IR P ID  KLDRENLR +L + D      L   S  S+WSGVSV+   RI  LNV NR LSGELPAAL ++S+LE+LHA
Sbjct:    2 IRCPRIDPSKLDRENLRAILERSDSNDREEL---SGRSEWSGVSVDSDDRIIVLNVTNRTLSGELPAALFEISNLEYLHA 78
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BLAST of mRNA_M-pyrifera_M_contig1140.2906.1 vs. uniprot
Match: A0A6N9A6Y2_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N9A6Y2_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.810e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 0 
Query:  117 DWSGVSVNKYGRITALNVANRGLSGELPAALGDVSHLEHLHATSN 161
            DW GV  +  GR+TALN+A  GLSGELP +LG +S L HL  + N
Sbjct:  234 DWFGVETDSIGRVTALNLAENGLSGELPDSLGGLSSLRHLDISGN 278
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1140.2906.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JTB3_9PHAE1.000e-4258.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI3_ECTSI5.920e-1557.50Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6N9A6Y2_9BACT1.810e-555.56Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 89..238
e-value: 3.0E-35
score: 123.4
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 152..211
e-value: 2.3E-6
score: 27.2
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 114..234
NoneNo IPR availablePANTHERPTHR46662:SF10coord: 114..234
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 117..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1140contigM-pyrifera_M_contig1140:9841..11321 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1140.2906.1mRNA_M-pyrifera_M_contig1140.2906.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig1140 9841..11321 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig1140.2906.1 ID=prot_M-pyrifera_M_contig1140.2906.1|Name=mRNA_M-pyrifera_M_contig1140.2906.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=240bp
MGTGASLDRSGLAALGVFEVADLVSGSWLPEYRQASIDYGIDGEMLIRLP
RDQLADALRRAGVESNDDLEFLLGELDNIRSPMIDSGKLDRENLRELLPQ
LDQQSSYGLGEGSDTSDWSGVSVNKYGRITALNVANRGLSGELPAALGDV
SHLEHLHATSNCFAGCVPEAIGRLTCLKSLRLDHNNLSGRLPGSLTRLAS
LATLDLAWNGLEGTIPTKIGTMTALRKLNLGKNKARYCL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt