prot_M-pyrifera_M_contig113844.2871.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig113844.2871.1
Unique Nameprot_M-pyrifera_M_contig113844.2871.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length99
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113844.2871.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036383Thrombospondin type-1 (TSP1) repeat superfamilyGENE3D2.20.100.10coord: 1..37
e-value: 5.0E-6
score: 28.6
IPR036383Thrombospondin type-1 (TSP1) repeat superfamilySUPERFAMILY82895TSP-1 type 1 repeatcoord: 1..25
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 87..99
e-value: 0.13
score: 12.5
coord: 2..23
e-value: 1.6E-4
score: 21.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113844contigM-pyrifera_M_contig113844:274..570 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113844.2871.1mRNA_M-pyrifera_M_contig113844.2871.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig113844 274..570 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig113844.2871.1 ID=prot_M-pyrifera_M_contig113844.2871.1|Name=mRNA_M-pyrifera_M_contig113844.2871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
DWSPCSQTCGGSGSQTRTVQCVRGLNATELQSAADMLAAGFTALDVSACS
DHRLFSDQNGGPRDRNATLWRTCHSQSCVTAASWDAGPFSPCNSTCGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036383TSP1_rpt_sf
IPR000884TSP1_rpt