prot_M-pyrifera_M_contig113716.2855.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig113716.2855.1
Unique Nameprot_M-pyrifera_M_contig113716.2855.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length141
Homology
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BLAST of mRNA_M-pyrifera_M_contig113716.2855.1 vs. uniprot
Match: A0A8J5XJM8_DIALT (Ku domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJM8_DIALT)

HSP 1 Score: 54.7 bits (130), Expect = 6.530e-6
Identity = 32/113 (28.32%), Postives = 53/113 (46.90%), Query Frame = 0 
Query:   28 ADEVDEERVARFYRFGHDLFPLSDAELSLVRPVSQREFQLLGFLPKDRIPRFSVLGDTEIVLGDERYPGAAQGVAALAIAMRDAGRVALGRFISRARSNLALVILIPKVQEQE 140
            A  V  E  AR ++FG DL        S       +  +LLGF+ +D IP+    G  ++++ D     AA  + AL +A+ +AG+  L RFI R  +       +P + + +
Sbjct:  332 AQNVRPEDTARAFKFGPDLVVEQSIAQSFAWKSGDKSLKLLGFVERDAIPQKDRFGGADVLIADPADAHAADALHALIVALSEAGKAMLVRFIPRKNAEPRTAACLPAIAQAD 444
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113716.2855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J5XJM8_DIALT6.530e-628.32Ku domain-containing protein n=1 Tax=Diacronema lu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006164Ku70/Ku80 beta-barrel domainSMARTSM00559ku_4coord: 28..140
e-value: 0.003
score: 21.5
IPR006164Ku70/Ku80 beta-barrel domainPFAMPF02735Kucoord: 9..139
e-value: 2.9E-20
score: 72.8
IPR016194SPOC-like, C-terminal domain superfamilyGENE3D2.40.290.10coord: 1..141
e-value: 2.2E-25
score: 91.4
IPR016194SPOC-like, C-terminal domain superfamilySUPERFAMILY100939SPOC domain-likecoord: 14..138
NoneNo IPR availablePANTHERPTHR12604KU AUTOANTIGEN DNA HELICASEcoord: 13..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113716contigM-pyrifera_M_contig113716:117..539 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113716.2855.1mRNA_M-pyrifera_M_contig113716.2855.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig113716 117..539 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig113716.2855.1 ID=prot_M-pyrifera_M_contig113716.2855.1|Name=mRNA_M-pyrifera_M_contig113716.2855.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
SSASSSSAEQSGMQKARVDRRFVEKGGADEVDEERVARFYRFGHDLFPLS
DAELSLVRPVSQREFQLLGFLPKDRIPRFSVLGDTEIVLGDERYPGAAQG
VAALAIAMRDAGRVALGRFISRARSNLALVILIPKVQEQEQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006164Ku70/Ku80_beta-barrel_dom
IPR016194SPOC-like_C_dom_sf