prot_M-pyrifera_M_contig11323.2759.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig11323.2759.1
Unique Name	prot_M-pyrifera_M_contig11323.2759.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	312

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig11323.2759.1 vs. uniprot
Match: D7G3Y1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y1_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 2.610e-42
Identity = 198/325 (60.92%), Postives = 220/325 (67.69%), Query Frame = 0

Query:    1 QKASEGRAETQLAGRAGGGEAAEVARTTSAVASASAMSELAGLLHEQGKLTEAEELYRSALDMRTGALGAEHPSVGLSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGPRRPPNCSAIG------------ARGGGVGIAVTARSTASRPTPNPPQASPPIGDVMVDDKAAPKHSP-GSLV-SGRSTFDSNSTIGESGSPLPLREEAGGCHGAAAAGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------LPAEPGYQLRHHHLGNRDEE-EEKARAEEEKAERDWELAHSVAVASLNNLAVLLSEQG 304
            Q ASE +A   LAGRAG GE  ++ART SAVA ASA SELAGLLHEQGKL EAEELYRSALDMRT ALG EHPSVGLSASXXXXXXXXXXXXXXXXXXXXX       +S P  P                    RG  VGI VT ++T+SR TPNPP A+PP+GD+++DDKAAPK+SP  SLV +G S F S+  +G  G    + +E             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         L  E   ++R    G +  E EE  R  EEK+ RDWELAHSVAVASLNNLAVLLSEQG
Sbjct: 2013 QNASEEKAVRVLAGRAGDGEDGDLARTQSAVALASARSELAGLLHEQGKLLEAEELYRSALDMRTAALGVEHPSVGLSASXXXXXXXXXXXXXXXXXXXXXSMNIT--ASPPSLPQQXXXXXXXXXXXXXXPAPGRGDTVGIMVTTKATSSRATPNPPVATPPVGDLLLDDKAAPKNSPLDSLVPAGCSPFGSSGVVG-GGDARAVDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTGNSSGLLVVEQELEIR----GQQQREAEESPRTSEEKSGRDWELAHSVAVASLNNLAVLLSEQG 2330

[Close]

BLAST of mRNA_M-pyrifera_M_contig11323.2759.1 vs. uniprot
Match: A0A6H5KHL0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 8.530e-10
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = 0

Query:    1 QKASEGRAETQLAGRAGGGEAAEVARTTSAVASASAMSELAGLLHEQGKLTEAEELYRSAL 61
            Q ASE +A   +AGRAG GE  E+ART SAVA ASA SELAGLLHEQGKL EAEELYR A+
Sbjct: 2623 QNASEEKAVRVIAGRAGDGEDGELARTQSAVALASARSELAGLLHEQGKLLEAEELYRHAM 2683

[Close]

BLAST of mRNA_M-pyrifera_M_contig11323.2759.1 vs. uniprot
Match: A0A6H5KEH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH7_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.520e-6
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0

Query:  272 RAEEEKAERDWELAHSVAVASLNNLAVLLSEQG 304
            RA EEK+ RDWELAHSVAVASLNN+AVLLSEQG
Sbjct:   75 RASEEKSGRDWELAHSVAVASLNNVAVLLSEQG 107

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig11323.2759.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig11323.2759.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G3Y1_ECTSI	2.610e-42	60.92	Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect...	[more]
A0A6H5KHL0_9PHAE	8.530e-10	72.13	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KEH7_9PHAE	6.520e-6	87.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 263..283
None	No IPR available	PFAM	PF13424	TPR_12	coord: 34..105 e-value: 3.8E-11 score: 43.1
None	No IPR available	PANTHER	PTHR45783	FAMILY NOT NAMED	coord: 2..105
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 20..122 e-value: 3.0E-18 score: 68.1
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 32..105
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 34..67 score: 8.688

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig11323	contig	M-pyrifera_M_contig11323:403..4453 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig11323.2759.1	mRNA_M-pyrifera_M_contig11323.2759.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig11323 403..4453 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig11323.2759.1 ID=prot_M-pyrifera_M_contig11323.2759.1|Name=mRNA_M-pyrifera_M_contig11323.2759.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=312bp
QKASEGRAETQLAGRAGGGEAAEVARTTSAVASASAMSELAGLLHEQGKL
TEAEELYRSALDMRTGALGAEHPSVGLSASNLSGVLRDQGRRAEATLIMR
SAMSISVASSGPRRPPNCSAIGARGGGVGIAVTARSTASRPTPNPPQASP
PIGDVMVDDKAAPKHSPGSLVSGRSTFDSNSTIGESGSPLPLREEAGGCH
GAAAAGAVTAVAVAAAATAAGAGLHAQTANIAAVSANASAVAAASAPLPA
EPGYQLRHHHLGNRDEEEEKARAEEEKAERDWELAHSVAVASLNNLAVLL
SEQGVYACIRW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom