prot_M-pyrifera_M_contig112011.2512.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig112011.2512.1
Unique Nameprot_M-pyrifera_M_contig112011.2512.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length55
Homology
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BLAST of mRNA_M-pyrifera_M_contig112011.2512.1 vs. uniprot
Match: A0A6G1EL30_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1EL30_9ORYZ)

HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 0 
Query:    3 GEGVPPNNCTYNAAIKAC-GDAGALPEALELLDEMADKGVELSVVTYGTAIAA 54
            G G+PP+ CTYN  ++A   + G++  A  L DEM  +G+  +VVT+GT +AA
Sbjct:  146 GSGIPPDACTYNILMRAAVAEPGSVENACLLFDEMRQRGIAPTVVTFGTLVAA 198
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112011.2512.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6G1EL30_9ORYZ1.270e-543.40Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..55
e-value: 9.9E-12
score: 44.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 2.4E-6
score: 25.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 11.235
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..55
e-value: 8.6E-16
score: 59.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112011contigM-pyrifera_M_contig112011:356..520 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112011.2512.1mRNA_M-pyrifera_M_contig112011.2512.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig112011 356..526 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig112011.2512.1 ID=prot_M-pyrifera_M_contig112011.2512.1|Name=mRNA_M-pyrifera_M_contig112011.2512.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MEGEGVPPNNCTYNAAIKACGDAGALPEALELLDEMADKGVELSVVTYGT
AIAAC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf