prot_M-pyrifera_M_contig111901.2484.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig111901.2484.1
Unique Nameprot_M-pyrifera_M_contig111901.2484.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length132
Homology
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A6G0XV66_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV66_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.420e-13
Identity = 41/131 (31.30%), Postives = 74/131 (56.49%), Query Frame = 0
Query:    1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEEF 131
            ++Q TL ++AL+P    R   + +      N+QE+PKR DYN Q T Y + ++  ++   +V R  ++++ L+ RR     S+ +L+ R  Q L+   D K +F  ++  L RL+ ++   D ML+LF++F
Sbjct:  467 VEQKTLGEMALLPAAETRTRLFDMYRDKLLNLQEIPKRADYNPQFTLYCWSIDDNRLTRRLVERTQESLVKLRTRRKLEAESHKDLITRSDQ-LVEQHD-KEKFDRVSWSLDRLDRSILHLDRMLMLFDQF 595          
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A024UGS9_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGS9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.180e-13
Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 0
Query:    1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEEF 131
            L+Q TL ++AL+P    R   + +      N+QE+PKR DYN Q T Y + ++  ++   ++ R   T++ L+ RR     S+ +L+ R  Q L+   D   +F  ++  L RL+ A    D ML+LF++F
Sbjct:  491 LEQKTLGEMALLPAAETRSRLFEMYRDKLLNLQEIPKRTDYNPQFTLYCWSIDDARLTRRLLERAQSTIVKLRARRKGEAESHKDLIARSDQ-LVEQNDLD-KFDRVSRSLDRLDRATLHLDHMLMLFDQF 619          
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A3R6W0E4_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6W0E4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.460e-13
Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 0
Query:    1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEEF 131
            L+Q TL ++AL+P    R   + +      N+QE+PKR DYN Q T Y + ++  ++   ++ R   T++ L+ RR     S+ +L+ R  Q L+   D   +F  ++  L RL+ A    D ML+LF++F
Sbjct:  664 LEQKTLGEMALLPAAETRSRLFEMYRDKLLNLQEIPKRTDYNPQFTLYCWSIDDARLTRRLLERAQSTIVKLRARRKGEAESHKDLIARSDQ-LVEQNDLD-KFDRVSRSLDRLDRATLHLDHMLMLFDQF 792          
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A485LNW3_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNW3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.040e-12
Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = 0
Query:    1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEEF 131
            L+Q TL ++AL+P    R   + +      N+QE+PKR DYN Q T Y + V+  ++   +V R   T + L+ RR    +S+ +L+ R  Q L+   D   +F  ++  L RL   +   D ML+LF++F
Sbjct:  487 LEQKTLGEMALLPAAETRSRLFEMYRDKLLNLQEIPKRTDYNPQFTLYCWSVDDTRLTRRLVERTMDTTVKLRARRKDQADSHKDLIARSDQ-LVEQHDLD-KFDRVSRSLDRLXXGILHLDRMLMLFDQF 615          
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: UPI001939EB9D (DNA-directed RNA polymerase III subunit RPC3-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939EB9D)

HSP 1 Score: 70.9 bits (172), Expect = 1.060e-11
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 0
Query:    1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDR 89
            ++Q  +   A++P K A+ L Y +       MQE+PK  D+    T+YLF VN KKVV T++SR +K ++NL  R+ F    N  L+++
Sbjct:  347 MEQKQVEDFAMIPSKEAKELLYQMWAENLLVMQEIPKTADHAPSRTYYLFNVNIKKVVRTLLSRLNKMLVNLLARQQFEVKGNKRLLEK 435          
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: T0QKL7_SAPDV (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QKL7_SAPDV)

HSP 1 Score: 63.2 bits (152), Expect = 5.380e-9
Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 0
Query:    2 DQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQ 92
            ++ T+ +LAL+P    R   + L       MQE+PKR DYN Q T Y + V+HK ++  +V R   ++++L+ RR    + + +L+ R  Q
Sbjct:  488 EEKTIGELALLPASETRSRLFGLFQAKLIQMQEIPKRADYNPQYTLYCWSVDHKALIRRLVERIEISLVHLRTRRQSEADEHKDLIARSDQ 578          
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A1X7V828_AMPQE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V828_AMPQE)

HSP 1 Score: 61.6 bits (148), Expect = 1.810e-8
Identity = 41/148 (27.70%), Postives = 69/148 (46.62%), Query Frame = 0
Query:    1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFT-----QGLLRGGDSKARFR-ALTAC-----------LTRLEAAVQQADDMLLLFEEF 131
            L+Q  +S +AL+P K+A+ + Y+L    F  +QEVP+  DY    TF+LF +        ++ R +K + NL   R    + N  L++++      Q   +  +       ALT             + +LEA+  Q  + LL FEE+
Sbjct:  377 LEQKQISDMALIPNKKAKEILYSLLAENFITLQEVPRSNDYAPSRTFHLFSIELNTTTRIVLQRCYKALGNLMTCRKEEGSKNKRLLEKYKLWLRQQEAFQNEEEPIEIEEALTPTEREMTENVMKKIAKLEASELQLMESLLTFEEY 524          
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: W4H4R1_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H4R1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.450e-8
Identity = 38/131 (29.01%), Postives = 66/131 (50.38%), Query Frame = 0
Query:    1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEEF 131
            L+Q  L ++AL+P    R   + +      N+QE+PKR DYN Q T Y + V+  ++   +V R  ++++ L+ RR     S+ +L+ R  Q L+   D   +F  ++  L            ML+LF++F
Sbjct:  493 LEQKALGEMALLPAAETRSRLFDMYRDKLLNLQEIPKRTDYNPQFTLYCWSVDDIRLTRRLVERAQESIVKLRTRRKDEAESHKDLIARSDQ-LVEQNDLD-KFDRVSRSLXXXXXXXXXXXRMLMLFDQF 621          
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A168KU11_MUCCL (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Mucor TaxID=4830 RepID=A0A168KU11_MUCCL)

HSP 1 Score: 60.1 bits (144), Expect = 6.320e-8
Identity = 39/137 (28.47%), Postives = 70/137 (51.09%), Query Frame = 0
Query:    1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRF-------TQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEE 130
            L+++ + +LA++P K  R     L   G  ++QEVP+ GD  T  +F L+ V+  K  E +++  H+T+ NLQ R+N      + L+++           LL   D KA    +   ++R+E A  + D ML++  +
Sbjct:  424 LEEAQIQKLAMLPPKDVRFKLGVLLTHGIVDIQEVPRSGDRATSRSFLLWFVSIDKCFEALITDIHRTITNLQQRKNEELVRRSRLLEKLGRIDVLANMELLNEID-KAEVSKMDNIVSRIEIAKDRLDAMLMILRD 559          
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A1B6G3S8_9HEMI (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=2 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6G3S8_9HEMI)

HSP 1 Score: 58.9 bits (141), Expect = 1.490e-7
Identity = 30/90 (33.33%), Postives = 50/90 (55.56%), Query Frame = 0
Query:    1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRG-DYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDR 89
            ++Q  + QLA++P+K A+HL Y L    F  MQE+ K         T++LF V+  +V   ++   +K + N   RRNF  N N+ L+++
Sbjct:  242 MEQDQIQQLAMIPDKEAKHLTYKLLQENFLQMQELRKPTVSSGPNKTYFLFHVDLNQVARMVLDTCYKALANSLTRRNFEKNENSRLIEK 331          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6G0XV66_9STRA1.420e-1331.30DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]
A0A024UGS9_9STRA9.180e-1332.06DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A3R6W0E4_9STRA9.460e-1332.06DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A485LNW3_9STRA8.040e-1232.82DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
UPI001939EB9D1.060e-1137.08DNA-directed RNA polymerase III subunit RPC3-like ... [more]
T0QKL7_SAPDV5.380e-932.97DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]
A0A1X7V828_AMPQE1.810e-827.70DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
W4H4R1_9STRA3.450e-829.01DNA-directed RNA polymerase III subunit RPC3 n=11 ... [more]
A0A168KU11_MUCCL6.320e-828.47DNA-directed RNA polymerase III subunit RPC3 n=3 T... [more]
A0A1B6G3S8_9HEMI1.490e-733.33DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..53
e-value: 5.6E-12
score: 47.4
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 1..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111901contigM-pyrifera_M_contig111901:3..538 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111901.2484.1mRNA_M-pyrifera_M_contig111901.2484.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig111901 3..538 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig111901.2484.1 ID=prot_M-pyrifera_M_contig111901.2484.1|Name=mRNA_M-pyrifera_M_contig111901.2484.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLF
GVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDS
KARFRALTACLTRLEAAVQQADDMLLLFEEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR039748RPC3