prot_M-pyrifera_M_contig110801.2275.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig110801.2275.1
Unique Nameprot_M-pyrifera_M_contig110801.2275.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length68
Homology
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BLAST of mRNA_M-pyrifera_M_contig110801.2275.1 vs. uniprot
Match: A0A5A8E5Z3_CAFRO (RECA_2 domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E5Z3_CAFRO)

HSP 1 Score: 55.8 bits (133), Expect = 1.880e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0 
Query:    1 LGPTWAHEVDHRIVLHFAPGGDVRIARLVKSATRPEGAAAFAITAGGVRRP 51
            LG +WAH   +R+ L++   G VR+ARL KS +RP GAAAFA+T+ GVRRP
Sbjct:  280 LGDSWAHACTNRLFLYWF--GKVRVARLAKSPSRPLGAAAFAVTSEGVRRP 328
[Close]
BLAST of mRNA_M-pyrifera_M_contig110801.2275.1 vs. uniprot
Match: A0A5A8E3R9_CAFRO (RECA_2 domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3R9_CAFRO)

HSP 1 Score: 55.8 bits (133), Expect = 1.970e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0 
Query:    1 LGPTWAHEVDHRIVLHFAPGGDVRIARLVKSATRPEGAAAFAITAGGVRRP 51
            LG +WAH   +R+ L++   G VR+ARL KS +RP GAAAFA+T+ GVRRP
Sbjct:  397 LGDSWAHACTNRLFLYWF--GKVRVARLAKSPSRPLGAAAFAVTSEGVRRP 445
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110801.2275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8E5Z3_CAFRO1.880e-756.86RECA_2 domain-containing protein n=1 Tax=Cafeteria... [more]
A0A5A8E3R9_CAFRO1.970e-756.86RECA_2 domain-containing protein n=5 Tax=Cafeteria... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..59
e-value: 3.8E-8
score: 35.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110801contigM-pyrifera_M_contig110801:375..578 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110801.2275.1mRNA_M-pyrifera_M_contig110801.2275.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig110801 375..578 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig110801.2275.1 ID=prot_M-pyrifera_M_contig110801.2275.1|Name=mRNA_M-pyrifera_M_contig110801.2275.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
LGPTWAHEVDHRIVLHFAPGGDVRIARLVKSATRPEGAAAFAITAGGVRR
PTEIAASAAAVAAGGEL*
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