prot_M-pyrifera_M_contig110643.2237.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig110643.2237.1
Unique Nameprot_M-pyrifera_M_contig110643.2237.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length174
Homology
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BLAST of mRNA_M-pyrifera_M_contig110643.2237.1 vs. uniprot
Match: A0A1V9YGC1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGC1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.890e-22
Identity = 60/173 (34.68%), Postives = 92/173 (53.18%), Query Frame = 0 
Query:    3 LVSGGLDHAVCLWQPAKSPLTGWTLNRLWRVGSGDPGSHTARVSAVAVGKGPSKHLLFSGAWDRTVKVWPMRANGGNPTP-VATLDGHYGRVASIDVTQSGLHLVSASPDMTCIVRSTKQPAFAPLARYISLSADGAITTIAAGLDSFVSCSESGQVRVWPLPGAKSEWDDRF 174
            L + G DHA+ +W+     L G TL+    +    P +H + +S ++ G+G S HLLFSG WD T+KVW + A    PT  +  L GH GR++S+ VT+ G  LVS + D T  +     P F  L  Y+  + DG  +++A G +   +  + G +R+WPL  A    D  +
Sbjct:  570 LATCGNDHAIKIWR-----LRGHTLSEACHI----PDAHASVISCLSWGRGASSHLLFSGGWDHTIKVWDLTAVARAPTAAIGALMGHKGRLSSLQVTEDGQLLVSTAADGTTKLWQAVAP-FQLLCTYVG-AVDGGASSLAVGRNIIATGYDDGMIRIWPLMRADGSVDPEY 731
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BLAST of mRNA_M-pyrifera_M_contig110643.2237.1 vs. uniprot
Match: A0A067CRH4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRH4_SAPPC)

HSP 1 Score: 96.3 bits (238), Expect = 6.020e-20
Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 0 
Query:    3 LVSGGLDHAVCLWQPAKSPLTGWTLNRLWRVGSGDPGSHTARVSAVAVGKGPSKHLLFSGAWDRTVKVWPMRANGGNPT-PVATLDGHYGRVASIDVTQSGLHLVSASPDMTCIVRSTKQPAFAPLARYISLSADGAITTIAAGLDSFVSCSESGQVRVWPLPGAKSEWDDRF 174
            L + G DHA+ LW+     L G  L+     G   P +H + +S +  GK  S HLLFSG WD T+KVW +  +   P+ P+ TL GH GR++S+ VT  G  LVS + D T  +     P F  L  Y+  + +G  +++A G +   +  + G +RVWPL  +    D  +
Sbjct:  552 LATCGNDHAIKLWR-----LRGHALSE----GVLIPDAHLSVISCLTWGKHASSHLLFSGGWDHTIKVWDLTVDTRAPSAPIGTLHGHKGRLSSLQVTDDGQLLVSTAADGTTKLWQAVAP-FQLLCTYVG-AVEGGASSLAVGRNIIATGYDDGMIRVWPLMRSDGSVDAEY 713
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110643.2237.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1V9YGC1_9STRA5.890e-2234.68Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CRH4_SAPPC6.020e-2034.68Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 126..162
e-value: 45.0
score: 6.5
coord: 79..118
e-value: 2.5E-4
score: 30.4
coord: 26..72
e-value: 1.1
score: 16.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 41..71
e-value: 0.019
score: 15.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 38..71
score: 8.537
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..172
e-value: 2.1E-22
score: 81.7
NoneNo IPR availablePANTHERPTHR44006:SF1U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEINcoord: 2..122
NoneNo IPR availablePANTHERPTHR44006FAMILY NOT NAMEDcoord: 51..162
NoneNo IPR availablePANTHERPTHR44006FAMILY NOT NAMEDcoord: 2..122
NoneNo IPR availablePANTHERPTHR44006:SF1U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEINcoord: 51..162
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..171
score: 12.657
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110643contigM-pyrifera_M_contig110643:73..594 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110643.2237.1mRNA_M-pyrifera_M_contig110643.2237.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig110643 73..594 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig110643.2237.1 ID=prot_M-pyrifera_M_contig110643.2237.1|Name=mRNA_M-pyrifera_M_contig110643.2237.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
PLLVSGGLDHAVCLWQPAKSPLTGWTLNRLWRVGSGDPGSHTARVSAVAV
GKGPSKHLLFSGAWDRTVKVWPMRANGGNPTPVATLDGHYGRVASIDVTQ
SGLHLVSASPDMTCIVRSTKQPAFAPLARYISLSADGAITTIAAGLDSFV
SCSESGQVRVWPLPGAKSEWDDRF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf