prot_M-pyrifera_M_contig110405.2179.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig110405.2179.1
Unique Nameprot_M-pyrifera_M_contig110405.2179.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length146
Homology
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517W719_9PLAN (RNA polymerase sigma factor n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517W719_9PLAN)

HSP 1 Score: 277 bits (709), Expect = 7.910e-94
Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 0
Query:    1 MPQSKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 146
            M QSKT+SLFTALLSKDR+RIFSFIR+LIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYT RNHHRSLRHDRHYFDQDL+ETMSR REQHLANYN RIDYLHECLSSLT+SDQKLLQDAV+EKQS+ EIAK TEKS
Sbjct:    1 MSQSKTSSLFTALLSKDRIRIFSFIRTLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTVRNHHRSLRHDRHYFDQDLIETMSRNREQHLANYNSRIDYLHECLSSLTASDQKLLQDAVFEKQSLSEIAKATEKS 146          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A350KI19_9PLAN (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KI19_9PLAN)

HSP 1 Score: 241 bits (616), Expect = 1.440e-79
Identity = 115/143 (80.42%), Postives = 129/143 (90.21%), Query Frame = 0
Query:    4 SKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 146
            S   ++FT+LL KDR+RIF +IR+L+PH SDAEDVYQ V LTLWKKFEEFDRDRDFFPWACGIAFYTARNH+R +RHDR YFDQDL+ETMSRKREQHL+NYN RIDYLHECLSSLTSSDQKLL+DAV+EK+SI EIA  TEKS
Sbjct:   10 SSPRAIFTSLLDKDRIRIFQYIRTLVPHYSDAEDVYQHVSLTLWKKFEEFDRDRDFFPWACGIAFYTARNHYRGVRHDRLYFDQDLLETMSRKREQHLSNYNSRIDYLHECLSSLTSSDQKLLRDAVFEKRSIAEIAIKTEKS 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517Q1L2_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q1L2_9PLAN)

HSP 1 Score: 228 bits (582), Expect = 2.160e-74
Identity = 108/152 (71.05%), Postives = 134/152 (88.16%), Query Frame = 0
Query:    1 MPQSKTN------SLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 146
            M QSK++      S FT+LLSKDR+R+FSFIRS++ + SDAEDVYQRVCLTLW KF+EFD+ RDFFPWACG+A YT RNHHRSLRHDRHYFDQ+L+ET+S++REQHL+NYN RI++LHECL +L SSDQ+LLQDAV+EKQ++ EIAKTT++S
Sbjct:    1 MSQSKSSVGPSLRSHFTSLLSKDRIRLFSFIRSMVLNVSDAEDVYQRVCLTLWNKFDEFDQKRDFFPWACGVASYTVRNHHRSLRHDRHYFDQELIETISQQREQHLSNYNIRIEFLHECLRALNSSDQQLLQDAVFEKQAVTEIAKTTKRS 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517VDN1_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517VDN1_9PLAN)

HSP 1 Score: 224 bits (572), Expect = 2.660e-73
Identity = 104/135 (77.04%), Postives = 122/135 (90.37%), Query Frame = 0
Query:    9 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTT 143
            ++++LL ++R+RIF++IR+L+PH SDAEDVYQ VCLTLWKKF+EFDRDRDFFPW CGIAFYTARNH+R +RHDRH+F+QDLMETMSRKREQHL+NYN RIDYL ECLSSLTSS QKLL+D V EK SI EIA TT
Sbjct:   15 VYSSLLDQERLRIFNYIRTLVPHYSDAEDVYQHVCLTLWKKFKEFDRDRDFFPWVCGIAFYTARNHYRGVRHDRHHFNQDLMETMSRKREQHLSNYNSRIDYLRECLSSLTSSVQKLLRDPVIEKHSISEIAVTT 149          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A518I6Y0_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I6Y0_9PLAN)

HSP 1 Score: 204 bits (519), Expect = 8.940e-65
Identity = 94/139 (67.63%), Postives = 120/139 (86.33%), Query Frame = 0
Query:    8 SLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 146
            S FT+LLSK+R+RIF +I++L+PH+SDAEDVYQRVCLTLW KF+EFD++RDFF WACGIAFYT  NH RS++HDRH F+Q+L+ET+S+KREQHL+NYN RI+ L ECL+ L S+DQ+LLQ+A  + Q I EIAKT +KS
Sbjct:   14 SHFTSLLSKERLRIFGYIQALVPHSSDAEDVYQRVCLTLWNKFDEFDQERDFFFWACGIAFYTVCNHRRSIKHDRHCFNQELIETISQKREQHLSNYNVRIELLRECLNDLDSADQQLLQNATLKNQKIKEIAKTAQKS 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A2D5GZ99_9PLAN (RNA polymerase subunit sigma-70 n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5GZ99_9PLAN)

HSP 1 Score: 199 bits (506), Expect = 5.390e-63
Identity = 88/138 (63.77%), Postives = 119/138 (86.23%), Query Frame = 0
Query:    9 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 146
            +FT+LLSKDR+RIF +IR+L+P+NSDAEDVYQ VCLTLW KF+EFD+DRDFF WACG+AF+T  N+ RS+  DRH+F+Q+L+ETMS +RE+HL N++ R+D+L +C+ +L SSDQ+LL++AVYE QS+ EIAKT  K+
Sbjct:    1 MFTSLLSKDRLRIFGYIRTLVPNNSDAEDVYQHVCLTLWNKFDEFDQDRDFFSWACGVAFFTVCNYRRSIGRDRHFFNQELIETMSHEREEHLNNHDIRLDFLQDCMQNLNSSDQQLLKNAVYENQSVKEIAKTAGKT 138          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517RAB5_9PLAN (RNA polymerase sigma factor RpoE n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RAB5_9PLAN)

HSP 1 Score: 195 bits (495), Expect = 3.990e-61
Identity = 85/141 (60.28%), Postives = 116/141 (82.27%), Query Frame = 0
Query:    6 TNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 146
            +  LFT+LLSK+R+RIF +IR+L+PHNSDAED+YQRVCLTLWKKF+EFD++RDFF WACGIAFYT  N+ RS++HDRH++ Q+L+ETMS+KREQ L NYN R++ LH+CL+ L   D++LLQ+   + + + E+AK   +S
Sbjct:   12 SQGLFTSLLSKERLRIFGYIRALVPHNSDAEDIYQRVCLTLWKKFDEFDQERDFFFWACGIAFYTVCNYRRSIQHDRHFYSQELIETMSQKREQQLTNYNLRLELLHDCLNELPPEDRQLLQNVTLKNEPLKEMAKAANRS 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517VDM5_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VDM5_9PLAN)

HSP 1 Score: 191 bits (485), Expect = 1.320e-59
Identity = 86/138 (62.32%), Postives = 114/138 (82.61%), Query Frame = 0
Query:    9 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 146
            +FT+L+ ++R RIF++IR+L+PH SDAEDVYQ VCLTLWKKF EFD+ RDFF WACGI FYT  NH RS R+DRHYF Q+L+ETM+++REQ L+ YN RI+ LH+CL  L S+DQ+LL+ ++ EKQSI +IAKT +++
Sbjct:   15 VFTSLIDQERFRIFNYIRTLVPHYSDAEDVYQLVCLTLWKKFAEFDQKRDFFSWACGITFYTVCNHRRSRRNDRHYFSQELIETMAQQREQDLSKYNIRIELLHDCLDGLNSTDQQLLKKSILEKQSIKDIAKTADRA 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A2D5H4P6_9PLAN (RNA polymerase subunit sigma-70 n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5H4P6_9PLAN)

HSP 1 Score: 189 bits (480), Expect = 6.920e-59
Identity = 82/143 (57.34%), Postives = 115/143 (80.42%), Query Frame = 0
Query:    4 SKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 146
            + +  ++++LL ++R+RIF++IR+L+PH SDAEDVYQ VCLTLWKKF+EFD++RDFF WACGI FYT  NH RS+R DRHYF Q+L++TM+++RE  L+ YN RI+YL +C+  L  +DQ+LLQ  + EKQSI E AKT +++
Sbjct:   10 ASSRKVYSSLLDQERLRIFNYIRTLVPHYSDAEDVYQHVCLTLWKKFDEFDQERDFFSWACGITFYTVCNHRRSMRKDRHYFSQELIDTMAQQREHDLSKYNTRIEYLRDCMKCLNPTDQQLLQKTILEKQSIKEFAKTADRA 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517VT11_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VT11_9PLAN)

HSP 1 Score: 182 bits (461), Expect = 6.060e-56
Identity = 82/138 (59.42%), Postives = 110/138 (79.71%), Query Frame = 0
Query:    9 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 146
            +FT LL+ +R+RIF +IR+L+PHNSDAEDVYQ VCLTLW KF EFD++RDFF WACGIAF+T  N  RS++ DRH+F Q+L+ETMS +R +HL+N+N R++ L +C S L+S+DQ+LL  A +EKQSI E A+   K+
Sbjct:   15 VFTELLTTERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAFFTVCNFRRSIQRDRHFFSQELIETMSAERMRHLSNHNTRLELLQDCFSGLSSADQELLLQATFEKQSIKEFAEKAGKT 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517W719_9PLAN7.910e-9491.10RNA polymerase sigma factor n=8 Tax=Gimesia TaxID=... [more]
A0A350KI19_9PLAN1.440e-7980.42RNA polymerase subunit sigma-70 n=1 Tax=Planctomyc... [more]
A0A517Q1L2_9PLAN2.160e-7471.05RNA polymerase sigma factor n=2 Tax=Gimesia panare... [more]
A0A517VDN1_9PLAN2.660e-7377.04RNA polymerase sigma factor n=2 Tax=Gimesia TaxID=... [more]
A0A518I6Y0_9PLAN8.940e-6567.63RNA polymerase sigma factor n=1 Tax=Gimesia fumaro... [more]
A0A2D5GZ99_9PLAN5.390e-6363.77RNA polymerase subunit sigma-70 n=8 Tax=Planctomyc... [more]
A0A517RAB5_9PLAN3.990e-6160.28RNA polymerase sigma factor RpoE n=1 Tax=Gimesia a... [more]
A0A517VDM5_9PLAN1.320e-5962.32RNA polymerase sigma factor n=1 Tax=Gimesia algae ... [more]
A0A2D5H4P6_9PLAN6.920e-5957.34RNA polymerase subunit sigma-70 n=7 Tax=Planctomyc... [more]
A0A517VT11_9PLAN6.060e-5659.42RNA polymerase sigma factor n=2 Tax=Gimesia aquari... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 18..79
e-value: 5.6E-10
score: 38.8
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 20..145
e-value: 4.8E-13
score: 47.0
NoneNo IPR availableGENE3D1.10.1740.10coord: 3..109
e-value: 5.7E-14
score: 53.9
NoneNo IPR availablePANTHERPTHR43133:SF6coord: 4..145
IPR039425RNA polymerase sigma-70 likePANTHERPTHR43133FAMILY NOT NAMEDcoord: 4..145
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 9..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110405contigM-pyrifera_M_contig110405:3..440 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110405.2179.1mRNA_M-pyrifera_M_contig110405.2179.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig110405 3..440 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig110405.2179.1 ID=prot_M-pyrifera_M_contig110405.2179.1|Name=mRNA_M-pyrifera_M_contig110405.2179.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MPQSKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKF
EEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQH
LANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007627RNA_pol_sigma70_r2
IPR014284RNA_pol_sigma-70_dom
IPR039425RNA_pol_sigma-70
IPR013325RNA_pol_sigma_r2