prot_M-pyrifera_M_contig10878.1846.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig10878.1846.1
Unique Nameprot_M-pyrifera_M_contig10878.1846.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length84
Homology
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.530e-37
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 0
Query:    1 MPSPGPQVAPSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 84
            MP+PGPQ AP+TNESL+AAALAAAPP KQKNMIGERLYPLIYEGQP LAGKITGMLLEMDN ELLHLLESP+SL+ KI EA+ V
Sbjct:  596 MPAPGPQAAPATNESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPDSLAAKINEALQV 679          
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A7R9W8W3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8W3_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.510e-28
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 0
Query:   13 NESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 84
            NE+LTA+ALA+A P  QKNMIGERLYPLI+  QP LAGKITGMLLEMDN+ELLHLLESP++L+ KI EA+ V
Sbjct:   36 NEALTASALASATPEMQKNMIGERLYPLIHHSQPDLAGKITGMLLEMDNSELLHLLESPDALNAKIQEALQV 107          
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: K0RXK8_THAOC (PABC domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXK8_THAOC)

HSP 1 Score: 107 bits (267), Expect = 8.580e-28
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 0
Query:   11 STNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 84
            S NE LT AALA+A P  QKNMIGERLYPLI++ QP LAGKITGMLLEMDN+ELLHLLESPE+L  KI EA+ V
Sbjct:   25 SANEQLTPAALASATPEIQKNMIGERLYPLIHQTQPDLAGKITGMLLEMDNSELLHLLESPEALGAKIQEALQV 98          
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A7R9U8R0_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8R0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.170e-26
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 0
Query:    8 VAPSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 84
            VAP    +LT +ALAAA P +QKNMIGERLYPLI   QP LAGKITGMLLEMDN+ELLHLLESP++L  KI EA+ V
Sbjct:   44 VAPPVEAALTPSALAAASPTQQKNMIGERLYPLIMGTQPQLAGKITGMLLEMDNSELLHLLESPDALQAKINEALQV 120          
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.690e-26
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0
Query:   14 ESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 84
            ESLTA ALAAA P  QKNMIGERLYPLI+E QP LAGKITGMLLEMDN ELLHLLESP+SL  KI EA+ V
Sbjct:  593 ESLTAQALAAASPEMQKNMIGERLYPLIHESQPELAGKITGMLLEMDNGELLHLLESPDSLKAKIQEALQV 663          
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A6T8JM21_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JM21_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.850e-26
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 0
Query:   13 NESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 84
            NESLTA+ALA+A P  QKNMIGERLYPLI+  QP LAGKITGMLLEMDN+ELLHLLESP++L+ KI+EA+ V
Sbjct:  660 NESLTASALASATPEMQKNMIGERLYPLIHASQPELAGKITGMLLEMDNSELLHLLESPDALNAKISEALQV 731          
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A7S2MJB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MJB4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.490e-25
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 0
Query:   10 PSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 84
            P  +ESLT +ALA+A P  QKNMIGERLYPLI++ QP LAGKITGMLLEMDN+ELLHLLESPE+L+ KI EA+ V
Sbjct:  674 PQASESLTPSALASATPEMQKNMIGERLYPLIHQSQPDLAGKITGMLLEMDNSELLHLLESPEALNAKIQEALQV 748          
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A7S2RUB9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RUB9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.680e-25
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 0
Query:   10 PSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 84
            P+ +E LTAAALA+A P  QKNMIGERLYPLI+  +P LAGKITGMLLEMDN+ELLHLLESP++L  KI EA+ V
Sbjct:  227 PAPHEPLTAAALASASPDVQKNMIGERLYPLIHHSEPELAGKITGMLLEMDNSELLHLLESPDALKAKIGEALQV 301          
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A1E7FQC9_9STRA (Polyadenylate-binding protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQC9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.910e-25
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 0
Query:    2 PSPGPQVAPSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 84
            PS   Q  P+   +LTA+ALA+A P  QKNMIGERLYPLI++ QP LAGKITGMLLEMDN+ELLHLLESPE+L  KI EAI V
Sbjct:  535 PSQASQQMPAPEGALTASALASASPEMQKNMIGERLYPLIHQSQPELAGKITGMLLEMDNSELLHLLESPEALKHKIDEAIQV 617          
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A6U3UAG5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UAG5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.630e-25
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0
Query:   13 NESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 84
            +ESLT +ALA+A P  QKNMIGERLYPLI+  QP LAGKITGMLLEMDN+ELLHLLESPE+L+ KI EA+ V
Sbjct:  337 SESLTPSALASATPEMQKNMIGERLYPLIHHSQPELAGKITGMLLEMDNSELLHLLESPEALNAKIEEALQV 408          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI3.530e-3784.52Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A7R9W8W3_9STRA2.510e-2875.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
K0RXK8_THAOC8.580e-2875.68PABC domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7R9U8R0_9STRA1.170e-2671.43Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A835YVH9_9STRA5.690e-2680.28Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A6T8JM21_9STRA5.850e-2676.39Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2MJB4_9STRA1.490e-2573.33Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2RUB9_9STRA1.680e-2572.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1E7FQC9_9STRA1.910e-2569.88Polyadenylate-binding protein n=1 Tax=Fragilariops... [more]
A0A6U3UAG5_9STRA2.630e-2575.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002004Polyadenylate-binding protein/Hyperplastic disc proteinSMARTSM00517poly_2coord: 25..84
e-value: 1.5E-28
score: 110.9
IPR002004Polyadenylate-binding protein/Hyperplastic disc proteinPFAMPF00658PABPcoord: 19..84
e-value: 2.4E-28
score: 98.1
IPR002004Polyadenylate-binding protein/Hyperplastic disc proteinPROSITEPS51309PABCcoord: 13..84
score: 18.982
NoneNo IPR availableGENE3D1.10.1900.10coord: 10..84
e-value: 4.4E-32
score: 111.9
NoneNo IPR availablePANTHERPTHR24012RNA BINDING PROTEINcoord: 8..82
NoneNo IPR availablePANTHERPTHR24012:SF466POLYADENYLATE-BINDING PROTEIN 1-LIKEcoord: 8..82
IPR036053PABC (PABP) domainSUPERFAMILY63570PABC (PABP) domaincoord: 2..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10878contigM-pyrifera_M_contig10878:8564..8815 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10878.1846.1mRNA_M-pyrifera_M_contig10878.1846.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig10878 8564..8815 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig10878.1846.1 ID=prot_M-pyrifera_M_contig10878.1846.1|Name=mRNA_M-pyrifera_M_contig10878.1846.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MPSPGPQVAPSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAG
KITGMLLEMDNAELLHLLESPESLSTKITEAIHV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002004PABP_HYD
IPR036053PABP-dom