mRNA_M-pyrifera_M_contig10878.1846.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10878.1846.1
Unique NamemRNA_M-pyrifera_M_contig10878.1846.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.530e-37
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    1 MPSPGPQVAPSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 252
            MP+PGPQ AP+TNESL+AAALAAAPP KQKNMIGERLYPLIYEGQP LAGKITGMLLEMDN ELLHLLESP+SL+ KI EA+ V
Sbjct:  596 MPAPGPQAAPATNESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPDSLAAKINEALQV 679
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BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A7R9W8W3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8W3_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.510e-28
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:   37 NESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 252
            NE+LTA+ALA+A P  QKNMIGERLYPLI+  QP LAGKITGMLLEMDN+ELLHLLESP++L+ KI EA+ V
Sbjct:   36 NEALTASALASATPEMQKNMIGERLYPLIHHSQPDLAGKITGMLLEMDNSELLHLLESPDALNAKIQEALQV 107
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BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: K0RXK8_THAOC (PABC domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXK8_THAOC)

HSP 1 Score: 107 bits (267), Expect = 8.580e-28
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:   31 STNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 252
            S NE LT AALA+A P  QKNMIGERLYPLI++ QP LAGKITGMLLEMDN+ELLHLLESPE+L  KI EA+ V
Sbjct:   25 SANEQLTPAALASATPEIQKNMIGERLYPLIHQTQPDLAGKITGMLLEMDNSELLHLLESPEALGAKIQEALQV 98
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BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A7R9U8R0_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8R0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.170e-26
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   22 VAPSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 252
            VAP    +LT +ALAAA P +QKNMIGERLYPLI   QP LAGKITGMLLEMDN+ELLHLLESP++L  KI EA+ V
Sbjct:   44 VAPPVEAALTPSALAAASPTQQKNMIGERLYPLIMGTQPQLAGKITGMLLEMDNSELLHLLESPDALQAKINEALQV 120
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BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.690e-26
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   40 ESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 252
            ESLTA ALAAA P  QKNMIGERLYPLI+E QP LAGKITGMLLEMDN ELLHLLESP+SL  KI EA+ V
Sbjct:  593 ESLTAQALAAASPEMQKNMIGERLYPLIHESQPELAGKITGMLLEMDNGELLHLLESPDSLKAKIQEALQV 663
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BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A6T8JM21_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JM21_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.850e-26
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:   37 NESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 252
            NESLTA+ALA+A P  QKNMIGERLYPLI+  QP LAGKITGMLLEMDN+ELLHLLESP++L+ KI+EA+ V
Sbjct:  660 NESLTASALASATPEMQKNMIGERLYPLIHASQPELAGKITGMLLEMDNSELLHLLESPDALNAKISEALQV 731
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BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A7S2MJB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MJB4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.490e-25
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:   28 PSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 252
            P  +ESLT +ALA+A P  QKNMIGERLYPLI++ QP LAGKITGMLLEMDN+ELLHLLESPE+L+ KI EA+ V
Sbjct:  674 PQASESLTPSALASATPEMQKNMIGERLYPLIHQSQPDLAGKITGMLLEMDNSELLHLLESPEALNAKIQEALQV 748
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BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A7S2RUB9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RUB9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.680e-25
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:   28 PSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 252
            P+ +E LTAAALA+A P  QKNMIGERLYPLI+  +P LAGKITGMLLEMDN+ELLHLLESP++L  KI EA+ V
Sbjct:  227 PAPHEPLTAAALASASPDVQKNMIGERLYPLIHHSEPELAGKITGMLLEMDNSELLHLLESPDALKAKIGEALQV 301
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BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A1E7FQC9_9STRA (Polyadenylate-binding protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQC9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.910e-25
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:    4 PSPGPQVAPSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 252
            PS   Q  P+   +LTA+ALA+A P  QKNMIGERLYPLI++ QP LAGKITGMLLEMDN+ELLHLLESPE+L  KI EAI V
Sbjct:  535 PSQASQQMPAPEGALTASALASASPEMQKNMIGERLYPLIHQSQPELAGKITGMLLEMDNSELLHLLESPEALKHKIDEAIQV 617
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BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Match: A0A6U3UAG5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UAG5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.630e-25
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:   37 NESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAGKITGMLLEMDNAELLHLLESPESLSTKITEAIHV 252
            +ESLT +ALA+A P  QKNMIGERLYPLI+  QP LAGKITGMLLEMDN+ELLHLLESPE+L+ KI EA+ V
Sbjct:  337 SESLTPSALASATPEMQKNMIGERLYPLIHHSQPELAGKITGMLLEMDNSELLHLLESPEALNAKIEEALQV 408
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10878.1846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI3.530e-3784.52Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A7R9W8W3_9STRA2.510e-2875.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
K0RXK8_THAOC8.580e-2875.68PABC domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7R9U8R0_9STRA1.170e-2671.43Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A835YVH9_9STRA5.690e-2680.28Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A6T8JM21_9STRA5.850e-2676.39Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2MJB4_9STRA1.490e-2573.33Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2RUB9_9STRA1.680e-2572.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1E7FQC9_9STRA1.910e-2569.88Polyadenylate-binding protein n=1 Tax=Fragilariops... [more]
A0A6U3UAG5_9STRA2.630e-2575.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10878contigM-pyrifera_M_contig10878:8564..8815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.4e-31
Seed eggNOG ortholog2880.D8LTD5
Preferred namePAB1
KEGG koko:K13126
KEGG Pathwayko03013,ko03015,ko03018,map03013,map03015,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003727,GO:0003729,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008428,GO:0009889,GO:0009894,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031326,GO:0031329,GO:0031503,GO:0032268,GO:0032991,GO:0033036,GO:0034248,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051641,GO:0051649,GO:0060211,GO:0060255,GO:0061013,GO:0065007,GO:0065009,GO:0070717,GO:0070727,GO:0071014,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0098772,GO:1900151,GO:1901363,GO:1903311,GO:1990841,GO:1990904,GO:2000112
EggNOG free text desc.RNA binding
EggNOG OGsKOG0123@1,KOG0123@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03041
Exons1
Model size252
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.842128-CDS-M-pyrifera_M_contig10878:8563..88151622815597.842128-CDS-M-pyrifera_M_contig10878:8563..8815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10878 8564..8815 +
1692277480.741303-CDS-M-pyrifera_M_contig10878:8563..88151692277480.741303-CDS-M-pyrifera_M_contig10878:8563..8815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10878 8564..8815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10878.1846.1prot_M-pyrifera_M_contig10878.1846.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10878 8564..8815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10878.1846.1

>prot_M-pyrifera_M_contig10878.1846.1 ID=prot_M-pyrifera_M_contig10878.1846.1|Name=mRNA_M-pyrifera_M_contig10878.1846.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MPSPGPQVAPSTNESLTAAALAAAPPHKQKNMIGERLYPLIYEGQPVLAG
KITGMLLEMDNAELLHLLESPESLSTKITEAIHV
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mRNA from alignment at M-pyrifera_M_contig10878:8564..8815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10878.1846.1 ID=mRNA_M-pyrifera_M_contig10878.1846.1|Name=mRNA_M-pyrifera_M_contig10878.1846.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig10878:8564..8815+ (Macrocystis pyrifera P11B4 male)
ATGCCCTCGCCTGGCCCCCAGGTGGCACCGTCCACGAACGAGTCGTTGAC
GGCGGCTGCCCTCGCCGCGGCGCCGCCTCACAAGCAGAAGAACATGATCG
GAGAGCGCCTGTACCCGCTCATCTACGAGGGGCAGCCGGTGCTTGCCGGC
AAGATCACAGGCATGCTCCTGGAAATGGACAACGCGGAACTCCTCCACCT
TCTGGAGTCTCCCGAGTCTCTCTCCACCAAGATCACGGAGGCAATCCACG
TC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10878:8564..8815+

>mRNA_M-pyrifera_M_contig10878.1846.1 ID=mRNA_M-pyrifera_M_contig10878.1846.1|Name=mRNA_M-pyrifera_M_contig10878.1846.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig10878:8564..8815+ (Macrocystis pyrifera P11B4 male)
ATGCCCTCGCCTGGCCCCCAGGTGGCACCGTCCACGAACGAGTCGTTGAC
GGCGGCTGCCCTCGCCGCGGCGCCGCCTCACAAGCAGAAGAACATGATCG
GAGAGCGCCTGTACCCGCTCATCTACGAGGGGCAGCCGGTGCTTGCCGGC
AAGATCACAGGCATGCTCCTGGAAATGGACAACGCGGAACTCCTCCACCT
TCTGGAGTCTCCCGAGTCTCTCTCCACCAAGATCACGGAGGCAATCCACG
TCATGCCCTCGCCTGGCCCCCAGGTGGCACCGTCCACGAACGAGTCGTTG
ACGGCGGCTGCCCTCGCCGCGGCGCCGCCTCACAAGCAGAAGAACATGAT
CGGAGAGCGCCTGTACCCGCTCATCTACGAGGGGCAGCCGGTGCTTGCCG
GCAAGATCACAGGCATGCTCCTGGAAATGGACAACGCGGAACTCCTCCAC
CTTCTGGAGTCTCCCGAGTCTCTCTCCACCAAGATCACGGAGGCAATCCA
CGTC
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