prot_M-pyrifera_M_contig10807.1721.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig10807.1721.1
Unique Nameprot_M-pyrifera_M_contig10807.1721.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length178
Homology
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BLAST of mRNA_M-pyrifera_M_contig10807.1721.1 vs. uniprot
Match: D7FME6_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME6_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.040e-61
Identity = 108/170 (63.53%), Postives = 123/170 (72.35%), Query Frame = 0 
Query:    1 MDQWSLNPPS-DEDPYAPDCSSRAAEGFYVGALYGAVWGLTGRAASTSIFPSTTPVRLNQLSAATQPLIGGVGGAKLRSVD-YFRAFGRGVAGYGVSAVSTAGVFGVFLGVVNAGTCACERFRGWKDWVNNMLGGGAAGLSVALLSRHTRTPRIMAAHAAGAAAITSVVA 168
            M+ W++ PP      YAPDCSSRAAEGFYVGALYGAVWG+ GRAA     PST    + +L   +        G + R V    RAFGRG AGYG++A STAGVFGVF+G+VNAGTC CER RG KDW NN  GG AAGLSVALLSRHTRTP+++AAH AGAAAITSVVA
Sbjct:    1 MEDWNVEPPEMTHKDYAPDCSSRAAEGFYVGALYGAVWGVIGRAAHAPTLPSTPA--MGELKPPSGLQAQPAPGLETRGVSRQVRAFGRGAAGYGIAAASTAGVFGVFVGMVNAGTCGCERLRGKKDWFNNAFGGAAAGLSVALLSRHTRTPQMLAAHVAGAAAITSVVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10807.1721.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FME6_ECTSI1.040e-6163.53Similar to mitochondrial import inner membrane tra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 19..163
e-value: 5.1E-11
score: 42.9
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..114
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 171..177
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..88
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 115..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..170
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 126..146
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 147..151
NoneNo IPR availableTMHMMTMhelixcoord: 153..170
NoneNo IPR availableTMHMMTMhelixcoord: 126..143
NoneNo IPR availableTMHMMTMhelixcoord: 91..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10807contigM-pyrifera_M_contig10807:6113..9474 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10807.1721.1mRNA_M-pyrifera_M_contig10807.1721.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig10807 6113..9474 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig10807.1721.1 ID=prot_M-pyrifera_M_contig10807.1721.1|Name=mRNA_M-pyrifera_M_contig10807.1721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
MDQWSLNPPSDEDPYAPDCSSRAAEGFYVGALYGAVWGLTGRAASTSIFP
STTPVRLNQLSAATQPLIGGVGGAKLRSVDYFRAFGRGVAGYGVSAVSTA
GVFGVFLGVVNAGTCACERFRGWKDWVNNMLGGGAAGLSVALLSRHTRTP
RIMAAHAAGAAAITSVVAIARGRPAAE*
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