mRNA_M-pyrifera_M_contig10807.1721.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10807.1721.1
Unique NamemRNA_M-pyrifera_M_contig10807.1721.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10807.1721.1 vs. uniprot
Match: D7FME6_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME6_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.040e-61
Identity = 108/170 (63.53%), Postives = 123/170 (72.35%), Query Frame = 1 
Query:    1 MDQWSLNPPS-DEDPYAPDCSSRAAEGFYVGALYGAVWGLTGRAASTSIFPSTTPVRLNQLSAATQPLIGGVGGAKLRSVD-YFRAFGRGVAGYGVSAVSTAGVFGVFLGVVNAGTCACERFRGWKDWVNNMLGGGAAGLSVALLSRHTRTPRIMAAHAAGAAAITSVVA 504
            M+ W++ PP      YAPDCSSRAAEGFYVGALYGAVWG+ GRAA     PST    + +L   +        G + R V    RAFGRG AGYG++A STAGVFGVF+G+VNAGTC CER RG KDW NN  GG AAGLSVALLSRHTRTP+++AAH AGAAAITSVVA
Sbjct:    1 MEDWNVEPPEMTHKDYAPDCSSRAAEGFYVGALYGAVWGVIGRAAHAPTLPSTPA--MGELKPPSGLQAQPAPGLETRGVSRQVRAFGRGAAGYGIAAASTAGVFGVFVGMVNAGTCGCERLRGKKDWFNNAFGGAAAGLSVALLSRHTRTPQMLAAHVAGAAAITSVVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10807.1721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FME6_ECTSI1.040e-6163.53Similar to mitochondrial import inner membrane tra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10807contigM-pyrifera_M_contig10807:6113..9474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size534
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10807.1721.1prot_M-pyrifera_M_contig10807.1721.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10807 6113..9474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.5854363-CDS-M-pyrifera_M_contig10807:6112..62121622815590.5854363-CDS-M-pyrifera_M_contig10807:6112..6212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10807 6113..6212 +
1692277477.4821782-CDS-M-pyrifera_M_contig10807:6112..62121692277477.4821782-CDS-M-pyrifera_M_contig10807:6112..6212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10807 6113..6212 +
1622815590.5968843-CDS-M-pyrifera_M_contig10807:7839..79051622815590.5968843-CDS-M-pyrifera_M_contig10807:7839..7905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10807 7840..7905 +
1692277477.4909503-CDS-M-pyrifera_M_contig10807:7839..79051692277477.4909503-CDS-M-pyrifera_M_contig10807:7839..7905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10807 7840..7905 +
1622815590.6101816-CDS-M-pyrifera_M_contig10807:8265..84681622815590.6101816-CDS-M-pyrifera_M_contig10807:8265..8468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10807 8266..8468 +
1692277477.5026257-CDS-M-pyrifera_M_contig10807:8265..84681692277477.5026257-CDS-M-pyrifera_M_contig10807:8265..8468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10807 8266..8468 +
1622815590.6205664-CDS-M-pyrifera_M_contig10807:9309..94741622815590.6205664-CDS-M-pyrifera_M_contig10807:9309..9474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10807 9310..9474 +
1692277477.510443-CDS-M-pyrifera_M_contig10807:9309..94741692277477.510443-CDS-M-pyrifera_M_contig10807:9309..9474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10807 9310..9474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10807.1721.1

>prot_M-pyrifera_M_contig10807.1721.1 ID=prot_M-pyrifera_M_contig10807.1721.1|Name=mRNA_M-pyrifera_M_contig10807.1721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
MDQWSLNPPSDEDPYAPDCSSRAAEGFYVGALYGAVWGLTGRAASTSIFP
STTPVRLNQLSAATQPLIGGVGGAKLRSVDYFRAFGRGVAGYGVSAVSTA
GVFGVFLGVVNAGTCACERFRGWKDWVNNMLGGGAAGLSVALLSRHTRTP
RIMAAHAAGAAAITSVVAIARGRPAAE*
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mRNA from alignment at M-pyrifera_M_contig10807:6113..9474+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10807.1721.1 ID=mRNA_M-pyrifera_M_contig10807.1721.1|Name=mRNA_M-pyrifera_M_contig10807.1721.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3362bp|location=Sequence derived from alignment at M-pyrifera_M_contig10807:6113..9474+ (Macrocystis pyrifera P11B4 male)
ATGGACCAGTGGAGCCTCAACCCGCCGAGCGACGAAGACCCATACGCGCC
GGACTGCTCGTCTAGAGCGGCGGAAGGTTTCTACGTGGGAGCTCTCTATG
GTGCGGGCTACTTTGTTTGCGTCTCTCATTTATTTTTTCAATATTTCCCA
TGTTTCTCACCAGTATACGGCATGAAATATAATACCTGGTATATTCATGT
TCCGTTTCGTTAAAGAAAAACGTGATTAAATATGGGTTTTAGCTTCTTTT
TTCTTTTTTTTTTTTTCAATCCTCCGGCGGATTGGGTAGCCAAAATCAGG
TATACCTGGCCACTTTTTGGCCAAAATCAGTTGCATACTGGAAACGAGTA
CAAAGCACACGCCAGGAGCGCCCTGCTATTGGCCAGACTGACATCTGAAC
TGATTTTGGCTCGAATTGGCCAGGGTATATACCTGATTTTGTTTACTCTG
TCTAGCTTTCATCTGATTTTCGGCCAGTTTTGAACCAATCAGGGAGACCA
TACGTACACTGTTTCACCCTCTGCGTATGCATGTGCGGTCCCTCCGTTGC
ACAACTCTGGTGCATAAACGTACGTATGTACGCATTTATGCATACATACG
CACGCTTTGCACATGTACGTAGTACGTACGTATTTATGCATTCATGTACG
TACGGTGATCTCACTTTTTCATCATTGGGGCGTACGACAAAGATGTCAGG
AGACAGCATTTTCACCCCTTGACAGACAGCAACTTTGCCTCGACATGCCT
CGACTGACACCAAACTACTAGGTTTTAGTGTGTAACACTCAGCCCTACAC
CCTTGACAGCGCACGTTTTGCCTTGCTTGACATGTCTCCTGATATCCTTG
GTGTACGATGTACTTGAATTGTTACGACGTCTACTCTGTTGTTTTCTATG
GCCTATATGTGGAAGCCAGGGTCGGAGATATCGTAGATCTCGTAACACGC
ACGCGCGAAGGACATGTCACCGGTCAAGCAATATTAAATCTCGGGTCACG
AGTGGTCTCACGTCATTGACGGTGTTGACCCGTCCCCGGGAGATAACGAT
CGGGAGATTATCCGCCGCAGACTCTGGGGTGACAAAAAGTCCCCCCCCAC
CGAGTCCGACTAGCTCTAGCATCTCCTTGCTAAATATCAACGAAGAACCG
ACTCGGACGCTTGGCACCGTATAGGAACCACTACTGCTGCGACGATTTCG
ATCGATCTGTGCGTTCGTCTTTTTGCTGTTCTGGGTGTTGATGGGTAGAT
ATAACGGTTTAGTGTGAAAGACGCACGCACAGAACGATCGAAACCGTCGC
AGTAGTAGTGGTCCCTATACGGTGCCGGTGTGCATAGGCCAGCCGACAAT
ACCGGCAGTATATATAGCGTCAACCGGCACTAATTACTCCGCACACTACC
ACACTGGTTAGTGGTCAATCCCATCTGTGCCAAGCGAATTCGCCTTTCAC
TATACAGTGAAGGGCTGCCGGCACTGCCCAACCGGCACTATGGAGAGACC
ACCACCGTACTTTTGTTTCGTCTAAGGCCGCCAAACCTATTAAATATTTG
TGTCGGCAGGACATGTCTACAACTAATCTTGATCGTTTTTCGTTACATTG
GCGTCGTCGGCAGGACTGCCAAAGAGCAAAACATACCAGGGTATTCGCTT
TTCGAAATATGACTACGACCAAGAGTGACAAGGAGTACCCCTTTCCCCTT
ATCTCGCTTGCTTGCTGTTGCGACCAGGGGCTGTGTGGGGGCTGACCGGG
CGCGCTGCCTCCACAAGTATATTTCCGTCGACTACGCCGGTGAGTTGCTC
CGAGCAAGACGGACGAAGAAGGCGTTGCTTAAGTAGGGGAGGGGGGAAAT
ATGTTGATTGTACTCGATGTACTAGATGTGCTTGTAAACGGCTCGGGGGG
TTTCGTAGAGACTGCTGCCGGCATGTTTCTCCGTGTGGCACTGCGTGTGC
CTCTGGCAAGTGCGCTGTCTTCATTTGATAAATCTACGGTAAAATATCCC
GCCCTTTCTGAACCTCAAGTCACAATATCCCGCCCATTATGACCCCTATT
CACATATCCCACCCATTCTGACCCCCATTTACATTTATCCCGCGCATTCT
GGTCCCCAATTTTCACGATGTGCCTCCGTTTTGGCCGAGCCAGGTCGCGG
GAGGACTCAACCAGCTCTCTGCCGCGACTCAACCGCTAATCGGGGGGGTG
GGGGGGGCAAAGTTGCGGTCGGTAGATTATTTCCGCGCATTCGGCAGGGG
CGTTGCCGGCTACGGGGTGTCGGCGGTCTCTACGGCCGGCGTATTCGGCG
TGTTTCTTGGCGTCGTCAACGCTGGAACTTGCGCTTGCGAGCGGTTTCGA
GGGTGGGTTTCCTGTGATAAAGACAGGAGGGGGGGGCAGGGGGGGGGGGT
CTGCGATGTGTATATACGGCCTGCGTGTTCGTCGTTTTTCTTGGCGTCAT
TAATGTTGGAATTTGTGCTTGCGAGTACATCAAGAGGGTGGGTTTCCTGT
GATGCACGCAGTGGCGGGGGGGAGGGGGGGGGGTGTTGGCTTGCTGAGCG
TTTTTTTTTCTTATTGCCGTCGCGAACGCCGGAACTTGCACCTGCAAGCC
AATCAAAGGGAGGAGTTCCTGCGATAAAAGCAGGGGGGGGGGGGACTGCA
CATGTTTGCGCTCTCAAGCGTGCTCCTTGACGCAAACCTCTGCGATTGGC
TTGTCTCGCAACATTCCGTATTGACATTGAGCCAGAGCTATCTCAGTCGG
AAGAGTAACCACTACCCCCCCGTTCCCATTCGCATTAGCCTCTGCCTCAG
CGACCGCATTGAAACTCCAAAGGTGGTGTGTAAATCGAGGGGTGTGGAGG
GGAGACGGCCTACGGTCCGCCGTGAGCAGTGCTTGTCAATTTTTTGTTTT
GTGTTCCCTCAGCAGTAGAAGCAGCAGCACGAGCAGCAGAAGCAGAAGCA
GTGTGTGTCGATTTCCGTTTCTTGCGTTTTCCCGCAAGCCTTATACGAGC
TCTCCGAACGATACACACCCTTCTTACACATACAAGTCTGCCTCCCCCTC
CCTCTCCTGACCTCCACCCTCCCTCCTCGTCCCCACCTCCCCGTTCCCCC
TCCCCCTCCGCCGCGCTGAAAAAAACTCCCTCTTCCTACTACTGTATCGC
ATATTCTGTTTCACCTGCCTTCGTGTCACGTGTTTTGGACCAGAGAGAAA
GACTGGGTGAACAACATGCTGGGGGGCGGGGCGGCCGGGCTTAGCGTGGC
CCTGCTCTCGAGACATACCCGCACCCCGAGGATAATGGCCGCTCACGCTG
CGGGGGCCGCCGCCATCACGTCCGTGGTTGCGATAGCCAGGGGGCGGCCA
GCAGCGGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10807:6113..9474+

>mRNA_M-pyrifera_M_contig10807.1721.1 ID=mRNA_M-pyrifera_M_contig10807.1721.1|Name=mRNA_M-pyrifera_M_contig10807.1721.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig10807:6113..9474+ (Macrocystis pyrifera P11B4 male)
ATGGACCAGTGGAGCCTCAACCCGCCGAGCGACGAAGACCCATACGCGCC
GGACTGCTCGTCTAGAGCGGCGGAAGGTTTCTACGTGGGAGCTCTCTATG
ATGGACCAGTGGAGCCTCAACCCGCCGAGCGACGAAGACCCATACGCGCC
GGACTGCTCGTCTAGAGCGGCGGAAGGTTTCTACGTGGGAGCTCTCTATG
GGGCTGTGTGGGGGCTGACCGGGCGCGCTGCCTCCACAAGTATATTTCCG
TCGACTACGCCGGTGAGGGCTGTGTGGGGGCTGACCGGGCGCGCTGCCTC
CACAAGTATATTTCCGTCGACTACGCCGGTGAGACTCAACCAGCTCTCTG
CCGCGACTCAACCGCTAATCGGGGGGGTGGGGGGGGCAAAGTTGCGGTCG
GTAGATTATTTCCGCGCATTCGGCAGGGGCGTTGCCGGCTACGGGGTGTC
GGCGGTCTCTACGGCCGGCGTATTCGGCGTGTTTCTTGGCGTCGTCAACG
CTGGAACTTGCGCTTGCGAGCGGTTTCGAGGGTGGGACTCAACCAGCTCT
CTGCCGCGACTCAACCGCTAATCGGGGGGGTGGGGGGGGCAAAGTTGCGG
TCGGTAGATTATTTCCGCGCATTCGGCAGGGGCGTTGCCGGCTACGGGGT
GTCGGCGGTCTCTACGGCCGGCGTATTCGGCGTGTTTCTTGGCGTCGTCA
ACGCTGGAACTTGCGCTTGCGAGCGGTTTCGAGGGTGGAAAGACTGGGTG
AACAACATGCTGGGGGGCGGGGCGGCCGGGCTTAGCGTGGCCCTGCTCTC
GAGACATACCCGCACCCCGAGGATAATGGCCGCTCACGCTGCGGGGGCCG
CCGCCATCACGTCCGTGGTTGCGATAGCCAGGGGGCGGCCAGCAGCGGAA
TGAAAAGACTGGGTGAACAACATGCTGGGGGGCGGGGCGGCCGGGCTTAG
CGTGGCCCTGCTCTCGAGACATACCCGCACCCCGAGGATAATGGCCGCTC
ACGCTGCGGGGGCCGCCGCCATCACGTCCGTGGTTGCGATAGCCAGGGGG
CGGCCAGCAGCGGAATGA
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