prot_M-pyrifera_M_contig107869.1669.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig107869.1669.1
Unique Nameprot_M-pyrifera_M_contig107869.1669.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length66
Homology
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A2E0JED6_9HYPH (Transcriptional regulator n=1 Tax=Nitratireductor sp. TaxID=1872084 RepID=A0A2E0JED6_9HYPH)

HSP 1 Score: 102 bits (254), Expect = 8.330e-27
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0
Query:    1 MSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 64
            M VSRQAVSKHLKTLS A LVSAEKSGRET+YSLELSRLEEANAFLV+V TKWD ALERLK+HV
Sbjct:   46 MDVSRQAVSKHLKTLSDAHLVSAEKSGRETRYSLELSRLEEANAFLVRVATKWDAALERLKAHV 109          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A4P7JF21_9RHOB (ArsR family transcriptional regulator n=1 Tax=Boseongicola sp. CCM32 TaxID=2552942 RepID=A0A4P7JF21_9RHOB)

HSP 1 Score: 100 bits (249), Expect = 4.810e-26
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 0
Query:    1 MSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 64
            M+VSRQAVSKHLKTL++AQLVSA KSGRET+YSLEL R+ EAN FLVQ+GTKWDRALERLK+HV
Sbjct:   46 MNVSRQAVSKHLKTLTEAQLVSAVKSGRETRYSLELPRVNEANEFLVQIGTKWDRALERLKTHV 109          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A6L7XRL8_9GAMM (Winged helix-turn-helix transcriptional regulator n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7XRL8_9GAMM)

HSP 1 Score: 95.9 bits (237), Expect = 3.700e-24
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0
Query:    1 MSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHVG 65
            M VSRQAVSKHLK L+ AQLVS  KSGRET+YSLE  RLEEANAFL  VGTKW+RALERLKSHVG
Sbjct:   45 MEVSRQAVSKHLKILADAQLVSVVKSGRETRYSLEPKRLEEANAFLALVGTKWNRALERLKSHVG 109          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: UPI0003658A1E (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Kiloniella laminariae TaxID=454162 RepID=UPI0003658A1E)

HSP 1 Score: 83.2 bits (204), Expect = 1.080e-18
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0
Query:    1 MSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 64
            M VSRQA+SKHLKTL+ A+L+S+E+SGRET YSLE  +LEEANAFL+ VG KWD AL RL+ H+
Sbjct:   48 MDVSRQAISKHLKTLTDARLISSERSGRETLYSLEKKKLEEANAFLMLVGEKWDDALGRLQVHL 111          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: UPI001FCEEB90 (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Lentilitoribacter sp. Alg239-R112 TaxID=2305987 RepID=UPI001FCEEB90)

HSP 1 Score: 78.2 bits (191), Expect = 3.150e-17
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    3 VSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 64
            VSRQA+SKHLK L+ A++VS EK+GRET Y LE +RLEEAN +LV VG KW+ AL+RLKS +
Sbjct:   48 VSRQAISKHLKVLADAKIVSTEKAGRETLYKLEPARLEEANDYLVHVGAKWELALQRLKSRL 109          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A286HLX6_9HYPH (ArsR family transcriptional regulator n=1 Tax=Hoeflea halophila TaxID=714899 RepID=A0A286HLX6_9HYPH)

HSP 1 Score: 75.9 bits (185), Expect = 3.480e-16
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 0
Query:    1 MSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 64
            M V+RQAVSKHLK L +A+LV+  K GRET Y+L+  RL+EA+AFL  VG KWD AL+RL++H+
Sbjct:   48 MDVTRQAVSKHLKLLDEARLVTCSKQGRETHYALDRDRLQEASAFLEAVGAKWDDALDRLQAHL 111          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: J2DPX8_9SPHN (Putative transcriptional regulator n=1 Tax=Sphingobium sp. AP49 TaxID=1144307 RepID=J2DPX8_9SPHN)

HSP 1 Score: 58.5 bits (140), Expect = 1.700e-9
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    3 VSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 64
            +SRQAV+KHL  L  A LV   K GRE  ++L    +E+A A+LVQVGT+WD  L RLK+ V
Sbjct:   42 ISRQAVAKHLDILLGAGLVQRRKKGREVHFALRRQGIEDAQAWLVQVGTQWDANLSRLKAMV 103          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A7W1U4D5_9BACT (Helix-turn-helix transcriptional regulator n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7W1U4D5_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 4.230e-9
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 0
Query:    2 SVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 64
            S++RQAV++HL+ L  A LV AE  GR   + L    LEEA  FL +V T+WD ALERLKS V
Sbjct:   53 SITRQAVTRHLRVLESAGLVRAEAIGRACVFELAPEPLEEARDFLARVSTQWDGALERLKSFV 115          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A5K7X3G0_9BACT (Transcriptional regulator n=1 Tax=Lacipirellula parvula TaxID=2650471 RepID=A0A5K7X3G0_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.050e-8
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    3 VSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 64
            V+RQA++KHLK L  A +V +E+SGRET ++L+   LEEA   L  V  +WD AL RLK  V
Sbjct:   52 VTRQAITKHLKVLEGAGIVRSERSGRETLFALQPRSLEEAQRALAAVSEQWDAALARLKDFV 113          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A6X210_BRUA4 (Regulatory protein ArsR n=27 Tax=Brucellaceae TaxID=118882 RepID=A6X210_BRUA4)

HSP 1 Score: 56.2 bits (134), Expect = 1.360e-8
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    2 SVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 64
            S++RQAV+KHL  L QA LV  EK GRE+++ L  + L +A A+L  V  +WD AL+RL+  V
Sbjct:   47 SITRQAVTKHLSVLEQANLVEREKVGRESRFRLHPAPLIDARAYLATVSNQWDDALQRLRRFV 109          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0JED6_9HYPH8.330e-2787.50Transcriptional regulator n=1 Tax=Nitratireductor ... [more]
A0A4P7JF21_9RHOB4.810e-2682.81ArsR family transcriptional regulator n=1 Tax=Bose... [more]
A0A6L7XRL8_9GAMM3.700e-2481.54Winged helix-turn-helix transcriptional regulator ... [more]
UPI0003658A1E1.080e-1868.75metalloregulator ArsR/SmtB family transcription fa... [more]
UPI001FCEEB903.150e-1766.13metalloregulator ArsR/SmtB family transcription fa... [more]
A0A286HLX6_9HYPH3.480e-1660.94ArsR family transcriptional regulator n=1 Tax=Hoef... [more]
J2DPX8_9SPHN1.700e-953.23Putative transcriptional regulator n=1 Tax=Sphingo... [more]
A0A7W1U4D5_9BACT4.230e-953.97Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A5K7X3G0_9BACT1.050e-851.61Transcriptional regulator n=1 Tax=Lacipirellula pa... [more]
A6X210_BRUA41.360e-849.21Regulatory protein ArsR n=27 Tax=Brucellaceae TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..65
e-value: 3.2E-14
score: 54.5
IPR001845HTH ArsR-type DNA-binding domainPROSITEPS50987HTH_ARSR_2coord: 1..54
score: 9.659
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 2..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107869contigM-pyrifera_M_contig107869:30..227 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107869.1669.1mRNA_M-pyrifera_M_contig107869.1669.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig107869 3..227 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig107869.1669.1 ID=prot_M-pyrifera_M_contig107869.1669.1|Name=mRNA_M-pyrifera_M_contig107869.1669.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVG
TKWDRALERLKSHVG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR001845HTH_ArsR_DNA-bd_dom
IPR036390WH_DNA-bd_sf