mRNA_M-pyrifera_M_contig107869.1669.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107869.1669.1
Unique NamemRNA_M-pyrifera_M_contig107869.1669.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A2E0JED6_9HYPH (Transcriptional regulator n=1 Tax=Nitratireductor sp. TaxID=1872084 RepID=A0A2E0JED6_9HYPH)

HSP 1 Score: 117 bits (293), Expect = 1.400e-32
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 1
Query:    1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219
            LS+S+LCEGM VSRQAVSKHLKTLS A LVSAEKSGRET+YSLELSRLEEANAFLV+V TKWD ALERLK+HV
Sbjct:   37 LSISALCEGMDVSRQAVSKHLKTLSDAHLVSAEKSGRETRYSLELSRLEEANAFLVRVATKWDAALERLKAHV 109          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A4P7JF21_9RHOB (ArsR family transcriptional regulator n=1 Tax=Boseongicola sp. CCM32 TaxID=2552942 RepID=A0A4P7JF21_9RHOB)

HSP 1 Score: 117 bits (292), Expect = 1.980e-32
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 1
Query:    1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219
            LSVSSLCEGM+VSRQAVSKHLKTL++AQLVSA KSGRET+YSLEL R+ EAN FLVQ+GTKWDRALERLK+HV
Sbjct:   37 LSVSSLCEGMNVSRQAVSKHLKTLTEAQLVSAVKSGRETRYSLELPRVNEANEFLVQIGTKWDRALERLKTHV 109          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A6L7XRL8_9GAMM (Winged helix-turn-helix transcriptional regulator n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7XRL8_9GAMM)

HSP 1 Score: 107 bits (268), Expect = 1.030e-28
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 1
Query:    1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHVG 222
            LSVSSL EGM VSRQAVSKHLK L+ AQLVS  KSGRET+YSLE  RLEEANAFL  VGTKW+RALERLKSHVG
Sbjct:   36 LSVSSLREGMEVSRQAVSKHLKILADAQLVSVVKSGRETRYSLEPKRLEEANAFLALVGTKWNRALERLKSHVG 109          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: UPI0003658A1E (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Kiloniella laminariae TaxID=454162 RepID=UPI0003658A1E)

HSP 1 Score: 97.4 bits (241), Expect = 4.030e-24
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219
            LSVS LCEGM VSRQA+SKHLKTL+ A+L+S+E+SGRET YSLE  +LEEANAFL+ VG KWD AL RL+ H+
Sbjct:   39 LSVSVLCEGMDVSRQAISKHLKTLTDARLISSERSGRETLYSLEKKKLEEANAFLMLVGEKWDDALGRLQVHL 111          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: UPI001FCEEB90 (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Lentilitoribacter sp. Alg239-R112 TaxID=2305987 RepID=UPI001FCEEB90)

HSP 1 Score: 92.4 bits (228), Expect = 1.090e-22
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219
            +S++SLCEG+ VSRQA+SKHLK L+ A++VS EK+GRET Y LE +RLEEAN +LV VG KW+ AL+RLKS +
Sbjct:   37 MSITSLCEGVDVSRQAISKHLKVLADAKIVSTEKAGRETLYKLEPARLEEANDYLVHVGAKWELALQRLKSRL 109          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A286HLX6_9HYPH (ArsR family transcriptional regulator n=1 Tax=Hoeflea halophila TaxID=714899 RepID=A0A286HLX6_9HYPH)

HSP 1 Score: 87.0 bits (214), Expect = 2.020e-20
Identity = 44/73 (60.27%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219
            L V++LC+GM V+RQAVSKHLK L +A+LV+  K GRET Y+L+  RL+EA+AFL  VG KWD AL+RL++H+
Sbjct:   39 LPVTALCDGMDVTRQAVSKHLKLLDEARLVTCSKQGRETHYALDRDRLQEASAFLEAVGAKWDDALDRLQAHL 111          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A7W1U4D5_9BACT (Helix-turn-helix transcriptional regulator n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7W1U4D5_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 1.660e-11
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 SVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219
            S++ L +G S++RQAV++HL+ L  A LV AE  GR   + L    LEEA  FL +V T+WD ALERLKS V
Sbjct:   44 SIADLTQGSSITRQAVTRHLRVLESAGLVRAEAIGRACVFELAPEPLEEARDFLARVSTQWDGALERLKSFV 115          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: J2DPX8_9SPHN (Putative transcriptional regulator n=1 Tax=Sphingobium sp. AP49 TaxID=1144307 RepID=J2DPX8_9SPHN)

HSP 1 Score: 62.8 bits (151), Expect = 5.270e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    4 SVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219
            S+  L E + +SRQAV+KHL  L  A LV   K GRE  ++L    +E+A A+LVQVGT+WD  L RLK+ V
Sbjct:   32 SIGQLGEDLPISRQAVAKHLDILLGAGLVQRRKKGREVHFALRRQGIEDAQAWLVQVGTQWDANLSRLKAMV 103          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A6P1T1E0_9RHOB (Metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Rhodobacteraceae bacterium 9Alg 56 TaxID=2683284 RepID=A0A6P1T1E0_9RHOB)

HSP 1 Score: 62.8 bits (151), Expect = 5.520e-11
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 SVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219
            S+++L EG  +SRQAV+KHL+TL  A LV A K GR T Y+L    ++ A A L +VG +WD AL RL + V
Sbjct:   37 SITALTEGAGMSRQAVTKHLRTLEAAGLVQAAKDGRSTVYALRPEPMDAARAHLERVGRQWDAALARLAAFV 108          
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: UPI0009FBAB29 (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Henriciella litoralis TaxID=568102 RepID=UPI0009FBAB29)

HSP 1 Score: 62.4 bits (150), Expect = 7.810e-11
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    4 SVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHVG 222
            S+S L  G  +SRQAV+KHLK L  A LVS ++ GRE++Y L+   L +A  +L  +   WD A+ERLK+ +G
Sbjct:   36 SISDLASGFGMSRQAVTKHLKVLESAGLVSNDRVGRESRYRLDPRALGDAQHYLDAISRHWDEAIERLKAFLG 108          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0JED6_9HYPH1.400e-3286.30Transcriptional regulator n=1 Tax=Nitratireductor ... [more]
A0A4P7JF21_9RHOB1.980e-3284.93ArsR family transcriptional regulator n=1 Tax=Bose... [more]
A0A6L7XRL8_9GAMM1.030e-2882.43Winged helix-turn-helix transcriptional regulator ... [more]
UPI0003658A1E4.030e-2471.23metalloregulator ArsR/SmtB family transcription fa... [more]
UPI001FCEEB901.090e-2264.38metalloregulator ArsR/SmtB family transcription fa... [more]
A0A286HLX6_9HYPH2.020e-2060.27ArsR family transcriptional regulator n=1 Tax=Hoef... [more]
A0A7W1U4D5_9BACT1.660e-1151.39Helix-turn-helix transcriptional regulator n=1 Tax... [more]
J2DPX8_9SPHN5.270e-1150.00Putative transcriptional regulator n=1 Tax=Sphingo... [more]
A0A6P1T1E0_9RHOB5.520e-1150.00Metalloregulator ArsR/SmtB family transcription fa... [more]
UPI0009FBAB297.810e-1146.58metalloregulator ArsR/SmtB family transcription fa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107869contigM-pyrifera_M_contig107869:3..227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score86.7
Seed ortholog evalue4.6e-15
Seed eggNOG ortholog1122135.KB893146_gene1560
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM regulatory protein, ArsR
EggNOG OGs1N0DJ@1224,2UC34@28211,COG0640@1,COG0640@2
COG Functional cat.K
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size198
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.002756-UTR-M-pyrifera_M_contig107869:2..291622815588.002756-UTR-M-pyrifera_M_contig107869:2..29Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107869 3..29 +
1692277476.5118725-UTR-M-pyrifera_M_contig107869:2..291692277476.5118725-UTR-M-pyrifera_M_contig107869:2..29Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107869 3..29 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.0142658-CDS-M-pyrifera_M_contig107869:29..2271622815588.0142658-CDS-M-pyrifera_M_contig107869:29..227Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107869 30..227 +
1692277476.5220869-CDS-M-pyrifera_M_contig107869:29..2271692277476.5220869-CDS-M-pyrifera_M_contig107869:29..227Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107869 30..227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107869.1669.1prot_M-pyrifera_M_contig107869.1669.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107869 30..227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107869.1669.1

>prot_M-pyrifera_M_contig107869.1669.1 ID=prot_M-pyrifera_M_contig107869.1669.1|Name=mRNA_M-pyrifera_M_contig107869.1669.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVG
TKWDRALERLKSHVG*
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mRNA from alignment at M-pyrifera_M_contig107869:3..227+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107869.1669.1 ID=mRNA_M-pyrifera_M_contig107869.1669.1|Name=mRNA_M-pyrifera_M_contig107869.1669.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig107869:3..227+ (Macrocystis pyrifera P11B4 male)
CTGTCCGTTTCGTCCCTTTGTGAGGGCATGAGCGTGTCTCGCCAAGCTGT CAGCAAACACCTTAAGACACTATCGCAAGCTCAGCTTGTTTCAGCGGAGA AATCAGGGCGGGAGACGCAGTACAGTCTGGAGCTTTCACGCCTTGAGGAG GCGAACGCATTTCTGGTGCAGGTCGGCACAAAATGGGATCGTGCACTGGA ACGGCTGAAATCTCATGTCGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107869:3..227+

>mRNA_M-pyrifera_M_contig107869.1669.1 ID=mRNA_M-pyrifera_M_contig107869.1669.1|Name=mRNA_M-pyrifera_M_contig107869.1669.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig107869:3..227+ (Macrocystis pyrifera P11B4 male)
ATGAGCGTGTCTCGCCAAGCTGTCAGCAAACACCTTAAGACACTATCGCA
AGCTCAGCTTGTTTCAGCGGAGAAATCAGGGCGGGAGACGCAGTACAGTC
TGGAGCTTTCACGCCTTGAGGAGGCGAACGCATTTCTGGTGCAGGTCGGC
ACAAAATGGGATCGTGCACTGGAACGGCTGAAATCTCATGTCGGATGAAT
GAGCGTGTCTCGCCAAGCTGTCAGCAAACACCTTAAGACACTATCGCAAG
CTCAGCTTGTTTCAGCGGAGAAATCAGGGCGGGAGACGCAGTACAGTCTG
GAGCTTTCACGCCTTGAGGAGGCGAACGCATTTCTGGTGCAGGTCGGCAC
AAAATGGGATCGTGCACTGGAACGGCTGAAATCTCATGTCGGATGA
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