mRNA_M-pyrifera_M_contig107869.1669.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A2E0JED6_9HYPH (Transcriptional regulator n=1 Tax=Nitratireductor sp. TaxID=1872084 RepID=A0A2E0JED6_9HYPH) HSP 1 Score: 117 bits (293), Expect = 1.400e-32 Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 1 Query: 1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219 LS+S+LCEGM VSRQAVSKHLKTLS A LVSAEKSGRET+YSLELSRLEEANAFLV+V TKWD ALERLK+HV Sbjct: 37 LSISALCEGMDVSRQAVSKHLKTLSDAHLVSAEKSGRETRYSLELSRLEEANAFLVRVATKWDAALERLKAHV 109
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A4P7JF21_9RHOB (ArsR family transcriptional regulator n=1 Tax=Boseongicola sp. CCM32 TaxID=2552942 RepID=A0A4P7JF21_9RHOB) HSP 1 Score: 117 bits (292), Expect = 1.980e-32 Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 1 Query: 1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219 LSVSSLCEGM+VSRQAVSKHLKTL++AQLVSA KSGRET+YSLEL R+ EAN FLVQ+GTKWDRALERLK+HV Sbjct: 37 LSVSSLCEGMNVSRQAVSKHLKTLTEAQLVSAVKSGRETRYSLELPRVNEANEFLVQIGTKWDRALERLKTHV 109
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A6L7XRL8_9GAMM (Winged helix-turn-helix transcriptional regulator n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7XRL8_9GAMM) HSP 1 Score: 107 bits (268), Expect = 1.030e-28 Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 1 Query: 1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHVG 222 LSVSSL EGM VSRQAVSKHLK L+ AQLVS KSGRET+YSLE RLEEANAFL VGTKW+RALERLKSHVG Sbjct: 36 LSVSSLREGMEVSRQAVSKHLKILADAQLVSVVKSGRETRYSLEPKRLEEANAFLALVGTKWNRALERLKSHVG 109
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: UPI0003658A1E (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Kiloniella laminariae TaxID=454162 RepID=UPI0003658A1E) HSP 1 Score: 97.4 bits (241), Expect = 4.030e-24 Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1 Query: 1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219 LSVS LCEGM VSRQA+SKHLKTL+ A+L+S+E+SGRET YSLE +LEEANAFL+ VG KWD AL RL+ H+ Sbjct: 39 LSVSVLCEGMDVSRQAISKHLKTLTDARLISSERSGRETLYSLEKKKLEEANAFLMLVGEKWDDALGRLQVHL 111
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: UPI001FCEEB90 (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Lentilitoribacter sp. Alg239-R112 TaxID=2305987 RepID=UPI001FCEEB90) HSP 1 Score: 92.4 bits (228), Expect = 1.090e-22 Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 1 Query: 1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219 +S++SLCEG+ VSRQA+SKHLK L+ A++VS EK+GRET Y LE +RLEEAN +LV VG KW+ AL+RLKS + Sbjct: 37 MSITSLCEGVDVSRQAISKHLKVLADAKIVSTEKAGRETLYKLEPARLEEANDYLVHVGAKWELALQRLKSRL 109
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A286HLX6_9HYPH (ArsR family transcriptional regulator n=1 Tax=Hoeflea halophila TaxID=714899 RepID=A0A286HLX6_9HYPH) HSP 1 Score: 87.0 bits (214), Expect = 2.020e-20 Identity = 44/73 (60.27%), Postives = 59/73 (80.82%), Query Frame = 1 Query: 1 LSVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219 L V++LC+GM V+RQAVSKHLK L +A+LV+ K GRET Y+L+ RL+EA+AFL VG KWD AL+RL++H+ Sbjct: 39 LPVTALCDGMDVTRQAVSKHLKLLDEARLVTCSKQGRETHYALDRDRLQEASAFLEAVGAKWDDALDRLQAHL 111
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A7W1U4D5_9BACT (Helix-turn-helix transcriptional regulator n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7W1U4D5_9BACT) HSP 1 Score: 64.3 bits (155), Expect = 1.660e-11 Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 1 Query: 4 SVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219 S++ L +G S++RQAV++HL+ L A LV AE GR + L LEEA FL +V T+WD ALERLKS V Sbjct: 44 SIADLTQGSSITRQAVTRHLRVLESAGLVRAEAIGRACVFELAPEPLEEARDFLARVSTQWDGALERLKSFV 115
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: J2DPX8_9SPHN (Putative transcriptional regulator n=1 Tax=Sphingobium sp. AP49 TaxID=1144307 RepID=J2DPX8_9SPHN) HSP 1 Score: 62.8 bits (151), Expect = 5.270e-11 Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1 Query: 4 SVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219 S+ L E + +SRQAV+KHL L A LV K GRE ++L +E+A A+LVQVGT+WD L RLK+ V Sbjct: 32 SIGQLGEDLPISRQAVAKHLDILLGAGLVQRRKKGREVHFALRRQGIEDAQAWLVQVGTQWDANLSRLKAMV 103
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: A0A6P1T1E0_9RHOB (Metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Rhodobacteraceae bacterium 9Alg 56 TaxID=2683284 RepID=A0A6P1T1E0_9RHOB) HSP 1 Score: 62.8 bits (151), Expect = 5.520e-11 Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1 Query: 4 SVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHV 219 S+++L EG +SRQAV+KHL+TL A LV A K GR T Y+L ++ A A L +VG +WD AL RL + V Sbjct: 37 SITALTEGAGMSRQAVTKHLRTLEAAGLVQAAKDGRSTVYALRPEPMDAARAHLERVGRQWDAALARLAAFV 108
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Match: UPI0009FBAB29 (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Henriciella litoralis TaxID=568102 RepID=UPI0009FBAB29) HSP 1 Score: 62.4 bits (150), Expect = 7.810e-11 Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1 Query: 4 SVSSLCEGMSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGTKWDRALERLKSHVG 222 S+S L G +SRQAV+KHLK L A LVS ++ GRE++Y L+ L +A +L + WD A+ERLK+ +G Sbjct: 36 SISDLASGFGMSRQAVTKHLKVLESAGLVSNDRVGRESRYRLDPRALGDAQHYLDAISRHWDEAIERLKAFLG 108 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107869.1669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig107869.1669.1 >prot_M-pyrifera_M_contig107869.1669.1 ID=prot_M-pyrifera_M_contig107869.1669.1|Name=mRNA_M-pyrifera_M_contig107869.1669.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp MSVSRQAVSKHLKTLSQAQLVSAEKSGRETQYSLELSRLEEANAFLVQVGback to top mRNA from alignment at M-pyrifera_M_contig107869:3..227+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig107869.1669.1 ID=mRNA_M-pyrifera_M_contig107869.1669.1|Name=mRNA_M-pyrifera_M_contig107869.1669.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig107869:3..227+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig107869:3..227+ >mRNA_M-pyrifera_M_contig107869.1669.1 ID=mRNA_M-pyrifera_M_contig107869.1669.1|Name=mRNA_M-pyrifera_M_contig107869.1669.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig107869:3..227+ (Macrocystis pyrifera P11B4 male)back to top |