prot_M-pyrifera_M_contig10785.1665.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig10785.1665.1
Unique Nameprot_M-pyrifera_M_contig10785.1665.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length75
Homology
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 3.830e-48
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPEAE 74
            MIIPVRCFTCGKVIGNKWETYLSLLQAD+NEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPE +
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPETD 74          
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA)

HSP 1 Score: 139 bits (350), Expect = 9.860e-42
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68
            MIIPVRCFTCGKVIGNKWETYL LLQ+D +EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68          
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 139 bits (349), Expect = 1.530e-41
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPEA 73
            MIIPVRCFTCGKVIGNKWE+YL LL+AD++EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN+LERR   E 
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRVTQEV 73          
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 8.600e-41
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR--TGPEAE 74
            MIIPVRCFTCGKV+GNKW++YL LL+AD++EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN+LERR  T P+ +
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRVVTDPQQQ 76          
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A7R9WWK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWK7_9STRA)

HSP 1 Score: 136 bits (343), Expect = 9.690e-40
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPEA 73
            MIIPVRCFTCGKVIGNKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+ E   G EA
Sbjct:   74 MIIPVRCFTCGKVIGNKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT-ESTEGMEA 145          
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.930e-39
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPEAE 74
            MIIPVRCFTCGKVIGNKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN  E   G E +
Sbjct:   33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYNQ-ESSEGIEQQ 105          
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.200e-39
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 64
            MIIPVRCFTCGKVI NKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 64          
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A7S4EET2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EET2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.370e-38
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 64
            MIIPVRCFTCGKVI NKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct:   34 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 97          
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A2P6TBS1_CHLSO (DNA-directed RNA polymerases and III subunit RPABC5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBS1_CHLSO)

HSP 1 Score: 132 bits (331), Expect = 1.440e-38
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPEAE 74
            MIIPVRCFTCGKVIGNKWETYL LLQA+++EGDA+D LGL RYCCRRM++THVDLIEKLLNYN+LER    + E
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLDLLQAEYSEGDAMDALGLNRYCCRRMIMTHVDLIEKLLNYNTLERNPVQQRE 74          
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 130 bits (326), Expect = 3.440e-38
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 64
            MIIPVRCFTCGKVIGNKWETYL LLQAD++EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYNT 64          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE3.830e-4895.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHW2_9STRA9.860e-4294.12DNA-directed RNA polymerase I, II, and III subunit... [more]
F0YLY9_AURAN1.530e-4186.30Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SAT8_9STRA8.600e-4181.58Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9WWK7_9STRA9.690e-4089.04Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1V7Q3_9STRA4.930e-3985.14Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A1E7EXD3_9STRA5.200e-3993.75DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S4EET2_9STRA1.370e-3893.75Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A2P6TBS1_CHLSO1.440e-3878.38DNA-directed RNA polymerases and III subunit RPABC... [more]
B8C402_THAPS3.440e-3890.63DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PIRSFPIRSF005653RpoN_RPB10coord: 1..72
e-value: 2.8E-33
score: 111.7
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PFAMPF01194RNA_pol_Ncoord: 1..59
e-value: 4.4E-33
score: 113.4
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PANTHERPTHR23431FAMILY NOT NAMEDcoord: 1..69
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10HAMAPMF_00250RNApol_arch_Ncoord: 1..63
score: 19.869
NoneNo IPR availableGENE3D1.10.10.60coord: 1..70
e-value: 2.7E-39
score: 135.0
NoneNo IPR availablePANTHERPTHR23431:SF5coord: 1..69
NoneNo IPR availablePRODOMPD006539coord: 9..63
e-value: 4.0E-18
score: 218.0
IPR020789RNA polymerases, subunit N, zinc binding sitePROSITEPS01112RNA_POL_N_8KDcoord: 2..11
IPR023580RNA polymerase subunit RPB10SUPERFAMILY46924RNA polymerase subunit RPB10coord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10785contigM-pyrifera_M_contig10785:3148..5545 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10785.1665.1mRNA_M-pyrifera_M_contig10785.1665.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig10785 3092..6082 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig10785.1665.1 ID=prot_M-pyrifera_M_contig10785.1665.1|Name=mRNA_M-pyrifera_M_contig10785.1665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVL
THVDLIEKLLNYNSLERRTGPEAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000268RNAP_N/Rpb10
IPR020789RNA_pol_suN_Zn-BS
IPR023580RNA_pol_su_RPB10