mRNA_M-pyrifera_M_contig10785.1665.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10785.1665.1
Unique NamemRNA_M-pyrifera_M_contig10785.1665.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.730e-44
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   57 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPEAE 278
            MIIPVRCFTCGKVIGNKWETYLSLLQAD+NEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPE +
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPETD 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.870e-38
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 3 
Query:   57 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 260
            MIIPVRCFTCGKVIGNKWETYL LLQ+D +EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68
[Close]
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 137 bits (344), Expect = 8.830e-38
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 3 
Query:   57 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPE 272
            MIIPVRCFTCGKVIGNKWE+YL LL+AD++EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN+LERR   E
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRVTQE 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 4.830e-37
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 3 
Query:   57 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR--TGPEAE 278
            MIIPVRCFTCGKV+GNKW++YL LL+AD++EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN+LERR  T P+ +
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRVVTDPQQQ 76
[Close]
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A7R9WWK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWK7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.710e-36
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 3 
Query:   51 VAMIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPEA 275
            V MIIPVRCFTCGKVIGNKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+ E   G EA
Sbjct:   72 VNMIIPVRCFTCGKVIGNKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT-ESTEGMEA 145
[Close]
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.370e-35
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:   57 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 248
            MIIPVRCFTCGKVI NKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 64
[Close]
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.860e-35
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   57 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 245
            MIIPVRCFTCGKVIGNKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A7S4EET2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EET2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.600e-35
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:   57 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 248
            MIIPVRCFTCGKVI NKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct:   34 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: A0A2P6TBS1_CHLSO (DNA-directed RNA polymerases and III subunit RPABC5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBS1_CHLSO)

HSP 1 Score: 130 bits (326), Expect = 7.520e-35
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 3 
Query:   57 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPEAE 278
            MIIPVRCFTCGKVIGNKWETYL LLQA+++EGDA+D LGL RYCCRRM++THVDLIEKLLNYN+LER    + E
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLDLLQAEYSEGDAMDALGLNRYCCRRMIMTHVDLIEKLLNYNTLERNPVQQRE 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 129 bits (323), Expect = 8.710e-35
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:   57 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 248
            MIIPVRCFTCGKVIGNKWETYL LLQAD++EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYNT 64
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10785.1665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE2.730e-4495.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHW2_9STRA2.870e-3894.12DNA-directed RNA polymerase I, II, and III subunit... [more]
F0YLY9_AURAN8.830e-3887.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SAT8_9STRA4.830e-3781.58Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9WWK7_9STRA2.710e-3688.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1E7EXD3_9STRA1.370e-3593.75DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1V7Q3_9STRA1.860e-3595.24Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A7S4EET2_9STRA3.600e-3593.75Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A2P6TBS1_CHLSO7.520e-3578.38DNA-directed RNA polymerases and III subunit RPABC... [more]
B8C402_THAPS8.710e-3590.63DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10785contigM-pyrifera_M_contig10785:3092..6082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue5.2e-31
Seed eggNOG ortholog44056.XP_009041410.1
Preferred namePOLR2L
KEGG rclassRC02795
KEGG koko:K02912,ko:K03007,ko:K11313,ko:K15271
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03010,ko03020,ko04623,ko05016,ko05169,ko05202,map00230,map00240,map01100,map03010,map03020,map04623,map05016,map05169,map05202
KEGG ModuleM00177,M00179,M00180,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009452,GO:0009719,GO:0009889,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0042797,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG1644@1,KOG3497@2759
Ec32 ortholog descriptionDNA-directed RNA polymerase, subunit N/Rpb10
Ec32 orthologEc-15_003650.1
EC3.6.4.12
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03036,ko03400
Exons2
Model size818
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10785.1665.1prot_M-pyrifera_M_contig10785.1665.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10785 3148..5545 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.7715497-UTR-M-pyrifera_M_contig10785:3091..31471622815587.7715497-UTR-M-pyrifera_M_contig10785:3091..3147Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10785 3092..3147 +
1692277476.433134-UTR-M-pyrifera_M_contig10785:3091..31471692277476.433134-UTR-M-pyrifera_M_contig10785:3091..3147Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10785 3092..3147 +
1622815587.814181-UTR-M-pyrifera_M_contig10785:5545..60821622815587.814181-UTR-M-pyrifera_M_contig10785:5545..6082Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10785 5546..6082 +
1692277476.4596565-UTR-M-pyrifera_M_contig10785:5545..60821692277476.4596565-UTR-M-pyrifera_M_contig10785:5545..6082Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10785 5546..6082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.7841573-CDS-M-pyrifera_M_contig10785:3147..33371622815587.7841573-CDS-M-pyrifera_M_contig10785:3147..3337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10785 3148..3337 +
1692277476.4437773-CDS-M-pyrifera_M_contig10785:3147..33371692277476.4437773-CDS-M-pyrifera_M_contig10785:3147..3337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10785 3148..3337 +
1622815587.7975185-CDS-M-pyrifera_M_contig10785:5510..55451622815587.7975185-CDS-M-pyrifera_M_contig10785:5510..5545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10785 5511..5545 +
1692277476.451543-CDS-M-pyrifera_M_contig10785:5510..55451692277476.451543-CDS-M-pyrifera_M_contig10785:5510..5545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10785 5511..5545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10785.1665.1

>prot_M-pyrifera_M_contig10785.1665.1 ID=prot_M-pyrifera_M_contig10785.1665.1|Name=mRNA_M-pyrifera_M_contig10785.1665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVL
THVDLIEKLLNYNSLERRTGPEAE*
back to top

mRNA from alignment at M-pyrifera_M_contig10785:3092..6082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10785.1665.1 ID=mRNA_M-pyrifera_M_contig10785.1665.1|Name=mRNA_M-pyrifera_M_contig10785.1665.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2991bp|location=Sequence derived from alignment at M-pyrifera_M_contig10785:3092..6082+ (Macrocystis pyrifera P11B4 male)
ATTGCTCACCACGCTCAGAAAAAGGTGGCTCGGAGACGCCACAGACAAGG
GTAGCCATGATCATCCCGGTGCGATGCTTCACGTGCGGGAAGGTGATCGG
AAACAAGTGGGAGACATATCTCAGCTTGCTGCAGGCAGACTTTAACGAGG
GTGACGCCTTGGACGAGTTGGGGCTGAAGAGATACTGCTGCAGGCGGATG
GTGCTCACACACGTTGACTTGATCGAGAAGCTCCTCAACTACAACTGTGA
GCAAGCGCCCAGCGGCAGTACCACGCTGCTCCTGTGGCTGCCAGTACCCA
CTTGCCTGGAGAGCAGGGATGGGTTCCAGGCTTGCTTCCTCGTTGTTTTG
CGAGTGAAATGTAGCCCTAGCAAAGCCGTCCAGTACAAGGACTATTACGT
AGCCCCTTTGCGACCCCGATATAGCGATCACAACCTGTGTGATAACTTTA
CGAGGAGGGTTGTTGTCCATTGTCTACGAGAAGCGCCCAGAAGTACGGGT
ACACTGGTACGGATAGGATCACATTGCGCCCGTGCCGTGCGACTCCTTGC
ATCAACCATTGTAACTCGGACACCTAGATAGTTGTTCGTATCACCCCCCA
ATCACGCAGTGGCCGTCGCTGTAATCGTCACATTTTACAATCAAATTTTC
CCGACATCAAATCCGAAGAGGATTAGCCTTCGATTACTCTATACCAGTAC
TTGACATCTACCATGTCAAGTCCGCGTGTGGTCCAGCACCAGCACCCCAG
TCTTGGTTGCTCGCTACTCGTTGGGCCTGGGTGACTACTGCTGTAGACCG
AGTCATGAGTCATGGATGTCATGAAACGATGAGTGAATATTACCTCAGCG
TCTGCTCTGCTGTGGTAACCTGCTGTTTATTAATGCGAAGGGAAGAGTTT
TGCCATCGGTTCAGCCAGCCCCCGTTTTCTTCCGATTTTTTTGCTCGTAC
GGTTATTAATACTCCTATTAATACCAGGTAGTAGTTTTTATCACCACGAA
ACGTGAGGAAAAGTCTGCTTTTCTTTTCACGATTTCTGCTTTTCTTTTCA
CGATTTACCTCTCTCAACATGCGAGATATTTCATACCTGTACGAGCAATA
ATCGAGTCGGAGGTTACGAACCGGCGTAGAACTACCGTATATTCAAGTGT
TATACACGGGTATCACACGACTTCGGCAAGAGTAGTCCCAGTCTCCCGTA
TATCCGGCCACGCTGCTGTCGGGAGTGCGCATGATGCTTTGGTTTATTGT
CTTCTACTATAAGTACAACGTAAGCACGCGGAAACACTTGCGATCTATTA
GCTTGTACCACAACACGACATGAGCGTACTCGCACTGGAAGATTGGACGT
ACGTTGAGACGTTGAAGCAATCGTCTTCTCAGACTCAAGGGGGTTCACGA
TTCAACACCCCCTTCGCCTCGTCGTCCATCCGGCGCAGAGATGCGGATGA
GCGTGGCTTCAATTGGTACTACGTACCTGGTGTTCGACTATTATTACACC
CTTTTGCGACCCACGAAACACGGTCAAAACTATCGACACGGGCAGCTTTA
CTGGCAAACACGAAAAGTGCGGTCTTATCACCCGTCTATCAACCCTTAAT
GACTGTATTCCCGTTGTGGAGAAAAAACGCTTGAAATTGGAGTCAGATTT
ACAGCTACTGCTTTAATATTAATAGTAGGTTTATATGTACAGTATAGTAG
TGAAAGGGCTAATCGTAGGGGCGCGAAGCGGTACGAGTAGCGTCATGCCC
CGCGGATGTCGTGCAGTTTAGTGCAATGTACTCTAGACCCCGTCAACCCG
AGATCCTTGCACCTAGTGTAGCCGATGCTGTAAGTGTTAATTCAGTTTCG
TCGCGCTTTCCTTCTGAAATCCCGAAGGGCATACCGTGTACTGAACGCCG
AGCGATGCGTCTATGGAAAGGTCGCATCGAGATCTCCCCAAAGCCACTTC
TTTAGTTGTGTGCACCCCCTTGATGTGGACTAATCCGGCTCGAAAAATCA
TCTCATCGGGTGTACTACCCTGCGTGTTATACGGCAAACCGTCTAGTGAA
AGCGCGCAGCAGCGTGAGCAGAATCATGCCGCGCCGCGTGTCGTACAACT
CTTTGCACTGTACCAACTACCAGGGTAATTCGAAAGGTAAACGGACCACC
CCCAAAGCTTGCAGCCTGCTGTGCTTCGTGAGGTCGATGCTTCAATCGTT
ATTTTGTTTCGTCAGTTCCCCCCTCTAGGAGTGCCGAGAGGGTTTCGTGC
CCCTCATAGGCTCGCAAGCCGTTATTTCTGTCCAGCTGCAGAGGCACATA
CTGCTGTTCAACAACTCTGATCGACCTCTTTTTATGCTCAAACGTTCTTT
GTCAACGTGTCTTCCGACTATCCCTCGCCATGTATGCTTCCCTTCTCCCG
CACATCTTACTCTGAACAGCGCTCGAGAGGAGAACGGGACCGGAGGCGGA
GTAAACGGAGGGTTTCCCCCCCCGGGAGAGCGGAGGCATACTGCTGGCTT
CCTCTTTGGTGGAAAACCACGCCGCACGACCCAGAGGATCGCATCAACCC
TCCCGTTTTCGGCTGTTGAAATACTCAGCATTGTTACCGTCGTACAATAT
ATCGGGGTGGTTTTTCGACAGTACTGGCATTACTACTGGTGTTGCCCTGC
GTGTTCCACTCCTGCCGATGGGTTCCTTATTTTCTCGGAGGGTTTTTTTT
TTTCCGAGAGGGAGAATTTAAGCGGAGCTAGCCAGGGGTGCGCGAATGCG
TGCGGGGATGGGTAGCGTAGCTTGGGTTTTTGTCGATCAGGGAGTGGTCA
GTTTTTTCTGACCTAAGATGTGGAAGGGCGCCTCAGCACCTTTAGCAACG
CATGGAATGGGGGTCTCCATTAAGTGTAGCTTTGGGCGCACGCAGTGTCG
AAGGGAGGGCCTGCCTCTCCATGACGCCTTCGGTCGGACGTCTGGCGTTT
GTACAAAATAACTACAAAACGACATGGTCATCGTTACTTTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10785:3092..6082+

>mRNA_M-pyrifera_M_contig10785.1665.1 ID=mRNA_M-pyrifera_M_contig10785.1665.1|Name=mRNA_M-pyrifera_M_contig10785.1665.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig10785:3092..6082+ (Macrocystis pyrifera P11B4 male)
ATGATCATCCCGGTGCGATGCTTCACGTGCGGGAAGGTGATCGGAAACAA
GTGGGAGACATATCTCAGCTTGCTGCAGGCAGACTTTAACGAGGGTGACG
CCTTGGACGAGTTGGGGCTGAAGAGATACTGCTGCAGGCGGATGGTGCTC
ACACACGTTGACTTGATCGAGAAGCTCCTCAACTACAACTATGATCATCC
CGGTGCGATGCTTCACGTGCGGGAAGGTGATCGGAAACAAGTGGGAGACA
TATCTCAGCTTGCTGCAGGCAGACTTTAACGAGGGTGACGCCTTGGACGA
GTTGGGGCTGAAGAGATACTGCTGCAGGCGGATGGTGCTCACACACGTTG
ACTTGATCGAGAAGCTCCTCAACTACAACTCGCTCGAGAGGAGAACGGGA
CCGGAGGCGGAGTAACGCTCGAGAGGAGAACGGGACCGGAGGCGGAGTAA
back to top