prot_M-pyrifera_M_contig105943.1273.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig105943.1273.1
Unique Name	prot_M-pyrifera_M_contig105943.1273.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	210

Homology

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BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Match: UPI001594D7B9 (glycine--tRNA ligase subunit beta n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001594D7B9)

HSP 1 Score: 419 bits (1076), Expect = 2.720e-140
Identity = 209/210 (99.52%), Postives = 210/210 (100.00%), Query Frame = 0

Query:    1 ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQNGGGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 210
            ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQ+GGGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE
Sbjct:  235 ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQDGGGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 444

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BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Match: A0A2M7LHD1_9SPHN (Glycine--tRNA ligase beta subunit n=1 Tax=Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 TaxID=1974093 RepID=A0A2M7LHD1_9SPHN)

HSP 1 Score: 385 bits (988), Expect = 7.450e-126
Identity = 199/240 (82.92%), Postives = 204/240 (85.00%), Query Frame = 0

Query:    1 ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQNGGG------------------------------APPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 210
            +LVEDEGLVIENAGLTEWPVPLLG+FDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQ+G G                               PPSAVPAATSPSL DREEKLAPYFVCTANI ASDGGKAI+AGNEKVLAARLSDAKFFWELDQKT LEDHAKKL NIVFHEKLGTVADKVERVA+LAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE
Sbjct:  264 DLVEDEGLVIENAGLTEWPVPLLGSFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQHGEGDRAQRGGHGFASEPGSVGQAAPGSLLRPTTPPPSAVPAATSPSLGDREEKLAPYFVCTANIAASDGGKAIIAGNEKVLAARLSDAKFFWELDQKTKLEDHAKKLGNIVFHEKLGTVADKVERVARLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 503

[Close]

BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Match: A0A653JFB8_9SPHN (Glycine--tRNA ligase beta subunit n=1 Tax=Sphingorhabdus sp. 109 TaxID=2653173 RepID=A0A653JFB8_9SPHN)

HSP 1 Score: 373 bits (958), Expect = 5.160e-122
Identity = 192/223 (86.10%), Postives = 197/223 (88.34%), Query Frame = 0

Query:    2 LVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQNG---------GGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQT-----KQAARLCKADLVTEMVGEFPELQGLMGGYYAE 210
            LVEDEGLV+ENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQ+G         G  PPSAVPAATSPSLRDREEKLAP FVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKT LEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWL SLEG G  + +P  T      +AARLCKADLVTEMVGEFPELQGLMGGYYAE
Sbjct:  266 LVEDEGLVVENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQHGEADRAQRGGGATPPSAVPAATSPSLRDREEKLAPNFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTRLEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLVSLEGNGFYQPSPGDTFHGEVSEAARLCKADLVTEMVGEFPELQGLMGGYYAE 488

[Close]

BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Match: A0A127MEE2_9SPHN (Glycine--tRNA ligase beta subunit n=1 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MEE2_9SPHN)

HSP 1 Score: 357 bits (915), Expect = 7.670e-116
Identity = 182/210 (86.67%), Postives = 188/210 (89.52%), Query Frame = 0

Query:    1 ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQNGGGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 210
            +LVEDEGLVIENAGLTEWPVPLLG+FDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQ+G                   E+KLAP FVCTANI ASDGGKAI+AGNEKVLAARLSDAKFFWELDQKT LEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRA+PEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE
Sbjct:  235 DLVEDEGLVIENAGLTEWPVPLLGSFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQHG-------------------EDKLAPNFVCTANIAASDGGKAIIAGNEKVLAARLSDAKFFWELDQKTKLEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRADPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 425

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BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Match: A0A2G2CW51_9SPHN (Glycine--tRNA ligase beta subunit n=1 Tax=Sphingopyxis sp. TaxID=1908224 RepID=A0A2G2CW51_9SPHN)

HSP 1 Score: 355 bits (910), Expect = 2.120e-114
Identity = 183/211 (86.73%), Postives = 189/211 (89.57%), Query Frame = 0

Query:    1 ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYP-PNAQNGGGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 210
            +LVEDEGLVIENAGLTEWPVPLLG FDPAFLDVPEEVIQLTARVNQKYF+C+ P P A   GG P  A      PS R RE  LAP FVCTANIDASDGG AI+AGNEKVLAARLSDAKFFW+LDQKT+LEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE
Sbjct:  265 DLVEDEGLVIENAGLTEWPVPLLGRFDPAFLDVPEEVIQLTARVNQKYFICRTPLPLAGGAGGGPGDAGNPTPDPS-RKREGNLAPNFVCTANIDASDGGAAIIAGNEKVLAARLSDAKFFWDLDQKTSLEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 474

[Close]

BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Match: A0A1B6Z567_9SPHN (Glycine--tRNA ligase beta subunit n=1 Tax=Sphingomonadales bacterium EhC05 TaxID=1849171 RepID=A0A1B6Z567_9SPHN)

HSP 1 Score: 336 bits (862), Expect = 1.320e-107
Identity = 174/210 (82.86%), Postives = 179/210 (85.24%), Query Frame = 0

Query:    1 ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQNGGGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 210
            ELV+DEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLT RVNQKYF+C                         RD++  LAP FVCTANI ASDGGKAIVAGNEKVLAARLSDAKFFWELDQKT LEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRA+PEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE
Sbjct:  260 ELVQDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTTRVNQKYFIC-------------------------RDKQGALAPNFVCTANIAASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTRLEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRADPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 444

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BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Match: UPI001E551498 (glycine--tRNA ligase subunit beta n=1 Tax=Parasphingorhabdus litoris TaxID=394733 RepID=UPI001E551498)

HSP 1 Score: 329 bits (844), Expect = 3.660e-106
Identity = 172/216 (79.63%), Postives = 183/216 (84.72%), Query Frame = 0

Query:    1 ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYP-PNAQNGGGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQT-----KQAARLCKADLVTEMVGEFPELQGLMGGYYAE 210
            ELV DEGLVIENAGLTEWPVPLLG FDPAFLDVPEEVIQLTARVNQKYF+C+ P P A   GG P +A     +PS R RE  LAP F+CTANIDA+DGGKAI AGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWL SLEG G  +++P  T      +AARLCKADLVTEMVGEFP+LQGLMGGYYAE
Sbjct:  235 ELVADEGLVIENAGLTEWPVPLLGGFDPAFLDVPEEVIQLTARVNQKYFICRTPLPLAGGAGGGPETAGHPTPNPS-RKREGNLAPNFICTANIDATDGGKAIAAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLVSLEGNGFDQSSPGDTFHREVSEAARLCKADLVTEMVGEFPDLQGLMGGYYAE 449

[Close]

BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Match: A0A2D3RI31_9SPHN (Glycine--tRNA ligase beta subunit n=1 Tax=Sphingorhabdus sp. YGSMI21 TaxID=2077182 RepID=A0A2D3RI31_9SPHN)

HSP 1 Score: 326 bits (836), Expect = 1.020e-104
Identity = 170/209 (81.34%), Postives = 176/209 (84.21%), Query Frame = 0

Query:    2 LVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQNGGGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 210
            LV+D+GLV+ENAGLTEWPVPLLG FD +FLDVPEEVIQLTARVNQKYFV                         L+D + KL   FVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKT LEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE
Sbjct:  236 LVQDQGLVVENAGLTEWPVPLLGHFDKSFLDVPEEVIQLTARVNQKYFV-------------------------LKDGDGKLTNAFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTRLEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPELQGLMGGYYAE 419

[Close]

BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Match: A0A6H2DJT2_9SPHN (Glycine--tRNA ligase beta subunit n=1 Tax=Parasphingorhabdus halotolerans TaxID=2725558 RepID=A0A6H2DJT2_9SPHN)

HSP 1 Score: 316 bits (810), Expect = 1.900e-101
Identity = 167/220 (75.91%), Postives = 178/220 (80.91%), Query Frame = 0

Query:    1 ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQNGGGAPP-----SAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQT-----KQAARLCKADLVTEMVGEFPELQGLMGGYYAE 210
            ELVEDEGLVIENAGLTEWPVPLLG+FDPAFLDVPEEVIQLTARVNQKYFVC+Y   A +     P     S +   +S S  + +  L   FVCTANI ASDGGKAIVAGNEKVL ARLSDAKFFWELDQKT LEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWL SLEG G  +++P  T      +AARLCKADLVTEMVGEFPELQGLMGGYYAE
Sbjct:  235 ELVEDEGLVIENAGLTEWPVPLLGSFDPAFLDVPEEVIQLTARVNQKYFVCQYAGEASSAPDNDPERPSSSRLAEESSASSAEHKGGLTSNFVCTANIGASDGGKAIVAGNEKVLTARLSDAKFFWELDQKTPLEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLVSLEGNGFYQSSPGDTFHSEVSEAARLCKADLVTEMVGEFPELQGLMGGYYAE 454

[Close]

BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Match: UPI000D696DD6 (glycine--tRNA ligase subunit beta n=1 Tax=Sphingorhabdus sp. EL138 TaxID=2073156 RepID=UPI000D696DD6)

HSP 1 Score: 314 bits (804), Expect = 2.420e-100
Identity = 163/215 (75.81%), Postives = 172/215 (80.00%), Query Frame = 0

Query:    1 ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFVCKYPPNAQNGGGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVADKVERVAKLAEWLASLEGTGLLRANPEQT-----KQAARLCKADLVTEMVGEFPELQGLMGGYYAE 210
            ELV DEGLV+ENAGLTEWPVPLLG FDPAFLDVPEEVIQLTARVNQKYF+C                         RD+  KLAP F+CTANIDA+DGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHA+KLSNIVFHEKLGTVADKVERVAKLAEWL SLEG G  + NP  T      +AARLCKADLVTEMVGEFP+LQGLMGGYYAE
Sbjct:  235 ELVADEGLVVENAGLTEWPVPLLGGFDPAFLDVPEEVIQLTARVNQKYFIC-------------------------RDKSGKLAPNFICTANIDATDGGKAIVAGNEKVLAARLSDAKFFWELDQKTALEDHARKLSNIVFHEKLGTVADKVERVAKLAEWLVSLEGNGFDQPNPGDTFHGEVSEAARLCKADLVTEMVGEFPDLQGLMGGYYAE 424

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig105943.1273.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI001594D7B9	2.720e-140	99.52	glycine--tRNA ligase subunit beta n=1 Tax=Parasphi...	[more]
A0A2M7LHD1_9SPHN	7.450e-126	82.92	Glycine--tRNA ligase beta subunit n=1 Tax=Sphingom...	[more]
A0A653JFB8_9SPHN	5.160e-122	86.10	Glycine--tRNA ligase beta subunit n=1 Tax=Sphingor...	[more]
A0A127MEE2_9SPHN	7.670e-116	86.67	Glycine--tRNA ligase beta subunit n=1 Tax=Sphingor...	[more]
A0A2G2CW51_9SPHN	2.120e-114	86.73	Glycine--tRNA ligase beta subunit n=1 Tax=Sphingop...	[more]
A0A1B6Z567_9SPHN	1.320e-107	82.86	Glycine--tRNA ligase beta subunit n=1 Tax=Sphingom...	[more]
UPI001E551498	3.660e-106	79.63	glycine--tRNA ligase subunit beta n=1 Tax=Parasphi...	[more]
A0A2D3RI31_9SPHN	1.020e-104	81.34	Glycine--tRNA ligase beta subunit n=1 Tax=Sphingor...	[more]
A0A6H2DJT2_9SPHN	1.900e-101	75.91	Glycine--tRNA ligase beta subunit n=1 Tax=Parasphi...	[more]
UPI000D696DD6	2.420e-100	75.81	glycine--tRNA ligase subunit beta n=1 Tax=Sphingor...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015944	Glycine-tRNA ligase, beta subunit	PFAM	PF02092	tRNA_synt_2f	coord: 2..210 e-value: 3.7E-70 score: 237.4
IPR015944	Glycine-tRNA ligase, beta subunit	PANTHER	PTHR30075	GLYCYL-TRNA SYNTHETASE	coord: 76..209 coord: 3..51
IPR006194	Glycine-tRNA synthetase, heterodimeric	PROSITE	PS50861	AA_TRNA_LIGASE_II_GLYAB	coord: 150..210 score: 21.557
None	No IPR available	SUPERFAMILY	109604	HD-domain/PDEase-like	coord: 124..208

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig105943	contig	M-pyrifera_M_contig105943:1..630 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig105943.1273.1	mRNA_M-pyrifera_M_contig105943.1273.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig105943 1..630 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig105943.1273.1 ID=prot_M-pyrifera_M_contig105943.1273.1|Name=mRNA_M-pyrifera_M_contig105943.1273.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
ELVEDEGLVIENAGLTEWPVPLLGAFDPAFLDVPEEVIQLTARVNQKYFV
CKYPPNAQNGGGAPPSAVPAATSPSLRDREEKLAPYFVCTANIDASDGGK
AIVAGNEKVLAARLSDAKFFWELDQKTALEDHAKKLSNIVFHEKLGTVAD
KVERVAKLAEWLASLEGTGLLRANPEQTKQAARLCKADLVTEMVGEFPEL
QGLMGGYYAE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015944	Gly-tRNA-synth_bsu
IPR006194	Gly-tRNA-synth_heterodimer