prot_M-pyrifera_M_contig105922.1268.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig105922.1268.1
Unique Name	prot_M-pyrifera_M_contig105922.1268.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	130

Homology

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BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A2E7K5U5_9PLAN (RNA polymerase subunit sigma-70 n=9 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K5U5_9PLAN)

HSP 1 Score: 269 bits (688), Expect = 8.850e-91
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0

Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130
            MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD
Sbjct:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130

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BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A812MIX8_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812MIX8_SYMMI)

HSP 1 Score: 266 bits (679), Expect = 7.700e-83
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0

Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130
            MSITTSSSDQNSGE FTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQ+RDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD
Sbjct:    1 MSITTSSSDQNSGEKFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQDRDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130

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BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517RKJ0_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RKJ0_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 2.220e-70
Identity = 104/130 (80.00%), Postives = 114/130 (87.69%), Query Frame = 0

Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130
            MS +TSSSDQNS   FTSLL QERLRIFGYIR LVP+NSDAEDVYQHVCLTLWNKF EFDQERDFF+WACGI +FTVCNFRRS QRDRH++SQELIETMS ERMQHL N+N+RLELL+DCF  L   DQ+
Sbjct:    1 MSTSTSSSDQNSRGMFTSLLNQERLRIFGYIRALVPNNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAFFTVCNFRRSVQRDRHFYSQELIETMSMERMQHLGNHNIRLELLRDCFDRLGSDDQE 130

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BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517VT11_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VT11_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 2.290e-70
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 0

Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130
            MS   +SSDQ++   FT LL  ERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKF EFDQERDFF+WACGI +FTVCNFRRS QRDRH+FSQELIETMS ERM+HLSN+N RLELLQDCF  LS ADQ+
Sbjct:    1 MSTFNTSSDQDARRVFTELLTTERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAFFTVCNFRRSIQRDRHFFSQELIETMSAERMRHLSNHNTRLELLQDCFSGLSSADQE 130

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BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A518IHF0_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IHF0_9PLAN)

HSP 1 Score: 217 bits (553), Expect = 6.900e-70
Identity = 103/130 (79.23%), Postives = 113/130 (86.92%), Query Frame = 0

Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130
            MS +TSSSDQNS   FTSLL QERLRIFGY+R LVP+NSDAEDVYQHVCLTLWNKF EFDQERDFF+WACGI YFTVCNFRRS QRDRH+F+QELIETMS ERMQHL N+N+RLE L+DCF  L   DQ+
Sbjct:   25 MSTSTSSSDQNSRGMFTSLLNQERLRIFGYVRALVPNNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAYFTVCNFRRSVQRDRHFFNQELIETMSMERMQHLGNHNIRLEFLRDCFDRLGSDDQE 154

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BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A2D5GZ99_9PLAN (RNA polymerase subunit sigma-70 n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5GZ99_9PLAN)

HSP 1 Score: 194 bits (492), Expect = 3.860e-61
Identity = 85/114 (74.56%), Postives = 104/114 (91.23%), Query Frame = 0

Query:   16 FTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 129
            FTSLL ++RLRIFGYIRTLVP+NSDAEDVYQHVCLTLWNKFDEFDQ+RDFF+WACG+ +FTVCN+RRS  RDRH+F+QELIETMS ER +HL+N+++RL+ LQDC  +L+ +DQ
Sbjct:    2 FTSLLSKDRLRIFGYIRTLVPNNSDAEDVYQHVCLTLWNKFDEFDQDRDFFSWACGVAFFTVCNYRRSIGRDRHFFNQELIETMSHEREEHLNNHDIRLDFLQDCMQNLNSSDQ 115

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BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A518I6Y0_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I6Y0_9PLAN)

HSP 1 Score: 191 bits (485), Expect = 7.020e-60
Identity = 91/129 (70.54%), Postives = 107/129 (82.95%), Query Frame = 0

Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 129
            MS +  S DQ++   FTSLL +ERLRIFGYI+ LVPH+SDAEDVYQ VCLTLWNKFDEFDQERDFF WACGI ++TVCN RRS + DRH F+QELIET+SQ+R QHLSNYN+R+ELL++C   L  ADQ
Sbjct:    1 MSNSIPSLDQSARSHFTSLLSKERLRIFGYIQALVPHSSDAEDVYQRVCLTLWNKFDEFDQERDFFFWACGIAFYTVCNHRRSIKHDRHCFNQELIETISQKREQHLSNYNVRIELLRECLNDLDSADQ 129

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BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517RAB5_9PLAN (RNA polymerase sigma factor RpoE n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RAB5_9PLAN)

HSP 1 Score: 191 bits (485), Expect = 7.020e-60
Identity = 89/121 (73.55%), Postives = 100/121 (82.64%), Query Frame = 0

Query:    9 DQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 129
            + NS   FTSLL +ERLRIFGYIR LVPHNSDAED+YQ VCLTLW KFDEFDQERDFF WACGI ++TVCN+RRS Q DRH++SQELIETMSQ+R Q L+NYNLRLELL DC   L   D+
Sbjct:    9 NHNSQGLFTSLLSKERLRIFGYIRALVPHNSDAEDIYQRVCLTLWKKFDEFDQERDFFFWACGIAFYTVCNYRRSIQHDRHFYSQELIETMSQKREQQLTNYNLRLELLHDCLNELPPEDR 129

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BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A2D5H4P6_9PLAN (RNA polymerase subunit sigma-70 n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5H4P6_9PLAN)

HSP 1 Score: 184 bits (468), Expect = 2.460e-57
Identity = 84/119 (70.59%), Postives = 100/119 (84.03%), Query Frame = 0

Query:   11 NSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 129
            +S + ++SLL+QERLRIF YIRTLVPH SDAEDVYQHVCLTLW KFDEFDQERDFF+WACGI ++TVCN RRS ++DRHYFSQELI+TM+Q+R   LS YN R+E L+DC   L+  DQ
Sbjct:   11 SSRKVYSSLLDQERLRIFNYIRTLVPHYSDAEDVYQHVCLTLWKKFDEFDQERDFFSWACGITFYTVCNHRRSMRKDRHYFSQELIDTMAQQREHDLSKYNTRIEYLRDCMKCLNPTDQ 129

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BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517VDM5_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VDM5_9PLAN)

HSP 1 Score: 184 bits (468), Expect = 2.700e-57
Identity = 85/119 (71.43%), Postives = 98/119 (82.35%), Query Frame = 0

Query:   11 NSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 129
            N+ E FTSL++QER RIF YIRTLVPH SDAEDVYQ VCLTLW KF EFDQ+RDFF+WACGI ++TVCN RRS + DRHYFSQELIETM+Q+R Q LS YN+R+ELL DC   L+  DQ
Sbjct:   11 NAREVFTSLIDQERFRIFNYIRTLVPHYSDAEDVYQLVCLTLWKKFAEFDQKRDFFSWACGITFYTVCNHRRSRRNDRHYFSQELIETMAQQREQDLSKYNIRIELLHDCLDGLNSTDQ 129

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2E7K5U5_9PLAN	8.850e-91	100.00	RNA polymerase subunit sigma-70 n=9 Tax=Gimesia Ta...	[more]
A0A812MIX8_SYMMI	7.700e-83	98.46	Hypothetical protein n=1 Tax=Symbiodinium microadr...	[more]
A0A517RKJ0_9PLAN	2.220e-70	80.00	RNA polymerase sigma factor n=2 Tax=Gimesia alba T...	[more]
A0A517VT11_9PLAN	2.290e-70	80.00	RNA polymerase sigma factor n=2 Tax=Gimesia aquari...	[more]
A0A518IHF0_9PLAN	6.900e-70	79.23	RNA polymerase sigma factor n=2 Tax=Gimesia fumaro...	[more]
A0A2D5GZ99_9PLAN	3.860e-61	74.56	RNA polymerase subunit sigma-70 n=8 Tax=Planctomyc...	[more]
A0A518I6Y0_9PLAN	7.020e-60	70.54	RNA polymerase sigma factor n=1 Tax=Gimesia fumaro...	[more]
A0A517RAB5_9PLAN	7.020e-60	73.55	RNA polymerase sigma factor RpoE n=1 Tax=Gimesia a...	[more]
A0A2D5H4P6_9PLAN	2.460e-57	70.59	RNA polymerase subunit sigma-70 n=7 Tax=Planctomyc...	[more]
A0A517VDM5_9PLAN	2.700e-57	71.43	RNA polymerase sigma factor n=1 Tax=Gimesia algae ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.1740.10		coord: 5..115 e-value: 1.6E-14 score: 55.6
None	No IPR available	PANTHER	PTHR43133:SF6		coord: 6..126
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 82..130
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..64
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 65..81
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 19..86 e-value: 3.8E-11 score: 42.6
IPR039425	RNA polymerase sigma-70 like	PANTHER	PTHR43133	FAMILY NOT NAMED	coord: 6..126
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 13..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig105922	contig	M-pyrifera_M_contig105922:243..632 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig105922.1268.1	mRNA_M-pyrifera_M_contig105922.1268.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig105922 243..632 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig105922.1268.1 ID=prot_M-pyrifera_M_contig105922.1268.1|Name=mRNA_M-pyrifera_M_contig105922.1268.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCL
TLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMS
QERMQHLSNYNLRLELLQDCFYSLSQADQD

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007627	RNA_pol_sigma70_r2
IPR039425	RNA_pol_sigma-70
IPR013325	RNA_pol_sigma_r2