mRNA_M-pyrifera_M_contig105922.1268.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A2E7K5U5_9PLAN (RNA polymerase subunit sigma-70 n=9 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K5U5_9PLAN) HSP 1 Score: 269 bits (688), Expect = 8.850e-91 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1 Query: 1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 390 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD Sbjct: 1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A812MIX8_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812MIX8_SYMMI) HSP 1 Score: 266 bits (679), Expect = 7.700e-83 Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1 Query: 1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 390 MSITTSSSDQNSGE FTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQ+RDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD Sbjct: 1 MSITTSSSDQNSGEKFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQDRDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517RKJ0_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RKJ0_9PLAN) HSP 1 Score: 218 bits (554), Expect = 2.220e-70 Identity = 104/130 (80.00%), Postives = 114/130 (87.69%), Query Frame = 1 Query: 1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 390 MS +TSSSDQNS FTSLL QERLRIFGYIR LVP+NSDAEDVYQHVCLTLWNKF EFDQERDFF+WACGI +FTVCNFRRS QRDRH++SQELIETMS ERMQHL N+N+RLELL+DCF L DQ+ Sbjct: 1 MSTSTSSSDQNSRGMFTSLLNQERLRIFGYIRALVPNNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAFFTVCNFRRSVQRDRHFYSQELIETMSMERMQHLGNHNIRLELLRDCFDRLGSDDQE 130
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517VT11_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VT11_9PLAN) HSP 1 Score: 218 bits (554), Expect = 2.290e-70 Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 1 Query: 1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 390 MS +SSDQ++ FT LL ERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKF EFDQERDFF+WACGI +FTVCNFRRS QRDRH+FSQELIETMS ERM+HLSN+N RLELLQDCF LS ADQ+ Sbjct: 1 MSTFNTSSDQDARRVFTELLTTERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAFFTVCNFRRSIQRDRHFFSQELIETMSAERMRHLSNHNTRLELLQDCFSGLSSADQE 130
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A518IHF0_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IHF0_9PLAN) HSP 1 Score: 217 bits (553), Expect = 6.900e-70 Identity = 103/130 (79.23%), Postives = 113/130 (86.92%), Query Frame = 1 Query: 1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 390 MS +TSSSDQNS FTSLL QERLRIFGY+R LVP+NSDAEDVYQHVCLTLWNKF EFDQERDFF+WACGI YFTVCNFRRS QRDRH+F+QELIETMS ERMQHL N+N+RLE L+DCF L DQ+ Sbjct: 25 MSTSTSSSDQNSRGMFTSLLNQERLRIFGYVRALVPNNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAYFTVCNFRRSVQRDRHFFNQELIETMSMERMQHLGNHNIRLEFLRDCFDRLGSDDQE 154
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A2D5GZ99_9PLAN (RNA polymerase subunit sigma-70 n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5GZ99_9PLAN) HSP 1 Score: 194 bits (492), Expect = 3.860e-61 Identity = 85/114 (74.56%), Postives = 104/114 (91.23%), Query Frame = 1 Query: 46 FTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 387 FTSLL ++RLRIFGYIRTLVP+NSDAEDVYQHVCLTLWNKFDEFDQ+RDFF+WACG+ +FTVCN+RRS RDRH+F+QELIETMS ER +HL+N+++RL+ LQDC +L+ +DQ Sbjct: 2 FTSLLSKDRLRIFGYIRTLVPNNSDAEDVYQHVCLTLWNKFDEFDQDRDFFSWACGVAFFTVCNYRRSIGRDRHFFNQELIETMSHEREEHLNNHDIRLDFLQDCMQNLNSSDQ 115
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A518I6Y0_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I6Y0_9PLAN) HSP 1 Score: 191 bits (485), Expect = 7.020e-60 Identity = 91/129 (70.54%), Postives = 107/129 (82.95%), Query Frame = 1 Query: 1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 387 MS + S DQ++ FTSLL +ERLRIFGYI+ LVPH+SDAEDVYQ VCLTLWNKFDEFDQERDFF WACGI ++TVCN RRS + DRH F+QELIET+SQ+R QHLSNYN+R+ELL++C L ADQ Sbjct: 1 MSNSIPSLDQSARSHFTSLLSKERLRIFGYIQALVPHSSDAEDVYQRVCLTLWNKFDEFDQERDFFFWACGIAFYTVCNHRRSIKHDRHCFNQELIETISQKREQHLSNYNVRIELLRECLNDLDSADQ 129
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517RAB5_9PLAN (RNA polymerase sigma factor RpoE n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RAB5_9PLAN) HSP 1 Score: 191 bits (485), Expect = 7.020e-60 Identity = 89/121 (73.55%), Postives = 100/121 (82.64%), Query Frame = 1 Query: 25 DQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 387 + NS FTSLL +ERLRIFGYIR LVPHNSDAED+YQ VCLTLW KFDEFDQERDFF WACGI ++TVCN+RRS Q DRH++SQELIETMSQ+R Q L+NYNLRLELL DC L D+ Sbjct: 9 NHNSQGLFTSLLSKERLRIFGYIRALVPHNSDAEDIYQRVCLTLWKKFDEFDQERDFFFWACGIAFYTVCNYRRSIQHDRHFYSQELIETMSQKREQQLTNYNLRLELLHDCLNELPPEDR 129
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A2D5H4P6_9PLAN (RNA polymerase subunit sigma-70 n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5H4P6_9PLAN) HSP 1 Score: 184 bits (468), Expect = 2.460e-57 Identity = 84/119 (70.59%), Postives = 100/119 (84.03%), Query Frame = 1 Query: 31 NSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 387 +S + ++SLL+QERLRIF YIRTLVPH SDAEDVYQHVCLTLW KFDEFDQERDFF+WACGI ++TVCN RRS ++DRHYFSQELI+TM+Q+R LS YN R+E L+DC L+ DQ Sbjct: 11 SSRKVYSSLLDQERLRIFNYIRTLVPHYSDAEDVYQHVCLTLWKKFDEFDQERDFFSWACGITFYTVCNHRRSMRKDRHYFSQELIDTMAQQREHDLSKYNTRIEYLRDCMKCLNPTDQ 129
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517VDM5_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VDM5_9PLAN) HSP 1 Score: 184 bits (468), Expect = 2.700e-57 Identity = 85/119 (71.43%), Postives = 98/119 (82.35%), Query Frame = 1 Query: 31 NSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 387 N+ E FTSL++QER RIF YIRTLVPH SDAEDVYQ VCLTLW KF EFDQ+RDFF+WACGI ++TVCN RRS + DRHYFSQELIETM+Q+R Q LS YN+R+ELL DC L+ DQ Sbjct: 11 NAREVFTSLIDQERFRIFNYIRTLVPHYSDAEDVYQLVCLTLWKKFAEFDQKRDFFSWACGITFYTVCNHRRSRRNDRHYFSQELIETMAQQREQDLSKYNIRIELLHDCLDGLNSTDQ 129 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig105922.1268.1 >prot_M-pyrifera_M_contig105922.1268.1 ID=prot_M-pyrifera_M_contig105922.1268.1|Name=mRNA_M-pyrifera_M_contig105922.1268.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLback to top mRNA from alignment at M-pyrifera_M_contig105922:243..632+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig105922.1268.1 ID=mRNA_M-pyrifera_M_contig105922.1268.1|Name=mRNA_M-pyrifera_M_contig105922.1268.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig105922:243..632+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig105922:243..632+ >mRNA_M-pyrifera_M_contig105922.1268.1 ID=mRNA_M-pyrifera_M_contig105922.1268.1|Name=mRNA_M-pyrifera_M_contig105922.1268.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig105922:243..632+ (Macrocystis pyrifera P11B4 male)back to top |