mRNA_M-pyrifera_M_contig105922.1268.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105922.1268.1
Unique NamemRNA_M-pyrifera_M_contig105922.1268.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A2E7K5U5_9PLAN (RNA polymerase subunit sigma-70 n=9 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K5U5_9PLAN)

HSP 1 Score: 269 bits (688), Expect = 8.850e-91
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1
Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 390
            MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD
Sbjct:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130          
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A812MIX8_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812MIX8_SYMMI)

HSP 1 Score: 266 bits (679), Expect = 7.700e-83
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1
Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 390
            MSITTSSSDQNSGE FTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQ+RDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD
Sbjct:    1 MSITTSSSDQNSGEKFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQDRDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 130          
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517RKJ0_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RKJ0_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 2.220e-70
Identity = 104/130 (80.00%), Postives = 114/130 (87.69%), Query Frame = 1
Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 390
            MS +TSSSDQNS   FTSLL QERLRIFGYIR LVP+NSDAEDVYQHVCLTLWNKF EFDQERDFF+WACGI +FTVCNFRRS QRDRH++SQELIETMS ERMQHL N+N+RLELL+DCF  L   DQ+
Sbjct:    1 MSTSTSSSDQNSRGMFTSLLNQERLRIFGYIRALVPNNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAFFTVCNFRRSVQRDRHFYSQELIETMSMERMQHLGNHNIRLELLRDCFDRLGSDDQE 130          
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517VT11_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VT11_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 2.290e-70
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 390
            MS   +SSDQ++   FT LL  ERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKF EFDQERDFF+WACGI +FTVCNFRRS QRDRH+FSQELIETMS ERM+HLSN+N RLELLQDCF  LS ADQ+
Sbjct:    1 MSTFNTSSDQDARRVFTELLTTERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAFFTVCNFRRSIQRDRHFFSQELIETMSAERMRHLSNHNTRLELLQDCFSGLSSADQE 130          
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A518IHF0_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IHF0_9PLAN)

HSP 1 Score: 217 bits (553), Expect = 6.900e-70
Identity = 103/130 (79.23%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQD 390
            MS +TSSSDQNS   FTSLL QERLRIFGY+R LVP+NSDAEDVYQHVCLTLWNKF EFDQERDFF+WACGI YFTVCNFRRS QRDRH+F+QELIETMS ERMQHL N+N+RLE L+DCF  L   DQ+
Sbjct:   25 MSTSTSSSDQNSRGMFTSLLNQERLRIFGYVRALVPNNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAYFTVCNFRRSVQRDRHFFNQELIETMSMERMQHLGNHNIRLEFLRDCFDRLGSDDQE 154          
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A2D5GZ99_9PLAN (RNA polymerase subunit sigma-70 n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5GZ99_9PLAN)

HSP 1 Score: 194 bits (492), Expect = 3.860e-61
Identity = 85/114 (74.56%), Postives = 104/114 (91.23%), Query Frame = 1
Query:   46 FTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 387
            FTSLL ++RLRIFGYIRTLVP+NSDAEDVYQHVCLTLWNKFDEFDQ+RDFF+WACG+ +FTVCN+RRS  RDRH+F+QELIETMS ER +HL+N+++RL+ LQDC  +L+ +DQ
Sbjct:    2 FTSLLSKDRLRIFGYIRTLVPNNSDAEDVYQHVCLTLWNKFDEFDQDRDFFSWACGVAFFTVCNYRRSIGRDRHFFNQELIETMSHEREEHLNNHDIRLDFLQDCMQNLNSSDQ 115          
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A518I6Y0_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I6Y0_9PLAN)

HSP 1 Score: 191 bits (485), Expect = 7.020e-60
Identity = 91/129 (70.54%), Postives = 107/129 (82.95%), Query Frame = 1
Query:    1 MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 387
            MS +  S DQ++   FTSLL +ERLRIFGYI+ LVPH+SDAEDVYQ VCLTLWNKFDEFDQERDFF WACGI ++TVCN RRS + DRH F+QELIET+SQ+R QHLSNYN+R+ELL++C   L  ADQ
Sbjct:    1 MSNSIPSLDQSARSHFTSLLSKERLRIFGYIQALVPHSSDAEDVYQRVCLTLWNKFDEFDQERDFFFWACGIAFYTVCNHRRSIKHDRHCFNQELIETISQKREQHLSNYNVRIELLRECLNDLDSADQ 129          
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517RAB5_9PLAN (RNA polymerase sigma factor RpoE n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RAB5_9PLAN)

HSP 1 Score: 191 bits (485), Expect = 7.020e-60
Identity = 89/121 (73.55%), Postives = 100/121 (82.64%), Query Frame = 1
Query:   25 DQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 387
            + NS   FTSLL +ERLRIFGYIR LVPHNSDAED+YQ VCLTLW KFDEFDQERDFF WACGI ++TVCN+RRS Q DRH++SQELIETMSQ+R Q L+NYNLRLELL DC   L   D+
Sbjct:    9 NHNSQGLFTSLLSKERLRIFGYIRALVPHNSDAEDIYQRVCLTLWKKFDEFDQERDFFFWACGIAFYTVCNYRRSIQHDRHFYSQELIETMSQKREQQLTNYNLRLELLHDCLNELPPEDR 129          
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A2D5H4P6_9PLAN (RNA polymerase subunit sigma-70 n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5H4P6_9PLAN)

HSP 1 Score: 184 bits (468), Expect = 2.460e-57
Identity = 84/119 (70.59%), Postives = 100/119 (84.03%), Query Frame = 1
Query:   31 NSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 387
            +S + ++SLL+QERLRIF YIRTLVPH SDAEDVYQHVCLTLW KFDEFDQERDFF+WACGI ++TVCN RRS ++DRHYFSQELI+TM+Q+R   LS YN R+E L+DC   L+  DQ
Sbjct:   11 SSRKVYSSLLDQERLRIFNYIRTLVPHYSDAEDVYQHVCLTLWKKFDEFDQERDFFSWACGITFYTVCNHRRSMRKDRHYFSQELIDTMAQQREHDLSKYNTRIEYLRDCMKCLNPTDQ 129          
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Match: A0A517VDM5_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VDM5_9PLAN)

HSP 1 Score: 184 bits (468), Expect = 2.700e-57
Identity = 85/119 (71.43%), Postives = 98/119 (82.35%), Query Frame = 1
Query:   31 NSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMSQERMQHLSNYNLRLELLQDCFYSLSQADQ 387
            N+ E FTSL++QER RIF YIRTLVPH SDAEDVYQ VCLTLW KF EFDQ+RDFF+WACGI ++TVCN RRS + DRHYFSQELIETM+Q+R Q LS YN+R+ELL DC   L+  DQ
Sbjct:   11 NAREVFTSLIDQERFRIFNYIRTLVPHYSDAEDVYQLVCLTLWKKFAEFDQKRDFFSWACGITFYTVCNHRRSRRNDRHYFSQELIETMAQQREQDLSKYNIRIELLHDCLDGLNSTDQ 129          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105922.1268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7K5U5_9PLAN8.850e-91100.00RNA polymerase subunit sigma-70 n=9 Tax=Gimesia Ta... [more]
A0A812MIX8_SYMMI7.700e-8398.46Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A517RKJ0_9PLAN2.220e-7080.00RNA polymerase sigma factor n=2 Tax=Gimesia alba T... [more]
A0A517VT11_9PLAN2.290e-7080.00RNA polymerase sigma factor n=2 Tax=Gimesia aquari... [more]
A0A518IHF0_9PLAN6.900e-7079.23RNA polymerase sigma factor n=2 Tax=Gimesia fumaro... [more]
A0A2D5GZ99_9PLAN3.860e-6174.56RNA polymerase subunit sigma-70 n=8 Tax=Planctomyc... [more]
A0A518I6Y0_9PLAN7.020e-6070.54RNA polymerase sigma factor n=1 Tax=Gimesia fumaro... [more]
A0A517RAB5_9PLAN7.020e-6073.55RNA polymerase sigma factor RpoE n=1 Tax=Gimesia a... [more]
A0A2D5H4P6_9PLAN2.460e-5770.59RNA polymerase subunit sigma-70 n=7 Tax=Planctomyc... [more]
A0A517VDM5_9PLAN2.700e-5771.43RNA polymerase sigma factor n=1 Tax=Gimesia algae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105922contigM-pyrifera_M_contig105922:243..632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score193.4
Seed ortholog evalue6.8e-47
Seed eggNOG ortholog344747.PM8797T_20938
Preferred namerfaY
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog
EggNOG OGs2J3TV@203682,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size390
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.2942736-CDS-M-pyrifera_M_contig105922:242..6321622815568.2942736-CDS-M-pyrifera_M_contig105922:242..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105922 243..632 +
1692277467.6292021-CDS-M-pyrifera_M_contig105922:242..6321692277467.6292021-CDS-M-pyrifera_M_contig105922:242..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105922 243..632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105922.1268.1prot_M-pyrifera_M_contig105922.1268.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105922 243..632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105922.1268.1

>prot_M-pyrifera_M_contig105922.1268.1 ID=prot_M-pyrifera_M_contig105922.1268.1|Name=mRNA_M-pyrifera_M_contig105922.1268.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MSITTSSSDQNSGETFTSLLEQERLRIFGYIRTLVPHNSDAEDVYQHVCL
TLWNKFDEFDQERDFFAWACGIVYFTVCNFRRSNQRDRHYFSQELIETMS
QERMQHLSNYNLRLELLQDCFYSLSQADQD
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mRNA from alignment at M-pyrifera_M_contig105922:243..632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105922.1268.1 ID=mRNA_M-pyrifera_M_contig105922.1268.1|Name=mRNA_M-pyrifera_M_contig105922.1268.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig105922:243..632+ (Macrocystis pyrifera P11B4 male)
ATGTCCATTACGACCTCATCTTCGGATCAAAATTCCGGAGAGACCTTTAC ATCATTGCTGGAGCAGGAGCGATTACGAATATTCGGTTATATTCGTACGC TTGTACCCCACAATTCTGATGCCGAGGACGTATACCAGCATGTATGCCTG ACTCTCTGGAATAAATTCGACGAGTTTGATCAGGAACGCGACTTCTTTGC CTGGGCCTGTGGAATTGTATACTTCACCGTCTGCAACTTTCGGAGAAGTA ACCAGCGTGATCGGCACTATTTCAGCCAGGAGTTAATTGAAACGATGTCA CAGGAGCGAATGCAACATCTGAGCAACTACAATCTCAGGCTGGAGCTCCT GCAAGACTGTTTCTACAGCTTGAGCCAGGCGGACCAGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105922:243..632+

>mRNA_M-pyrifera_M_contig105922.1268.1 ID=mRNA_M-pyrifera_M_contig105922.1268.1|Name=mRNA_M-pyrifera_M_contig105922.1268.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig105922:243..632+ (Macrocystis pyrifera P11B4 male)
ATGTCCATTACGACCTCATCTTCGGATCAAAATTCCGGAGAGACCTTTAC
ATCATTGCTGGAGCAGGAGCGATTACGAATATTCGGTTATATTCGTACGC
TTGTACCCCACAATTCTGATGCCGAGGACGTATACCAGCATGTATGCCTG
ACTCTCTGGAATAAATTCGACGAGTTTGATCAGGAACGCGACTTCTTTGC
CTGGGCCTGTGGAATTGTATACTTCACCGTCTGCAACTTTCGGAGAAGTA
ACCAGCGTGATCGGCACTATTTCAGCCAGGAGTTAATTGAAACGATGTCA
CAGGAGCGAATGCAACATCTGAGCAACTACAATCTCAGGCTGGAGCTCCT
GCAAGACTGTTTCTACAGCTTGAGCCAGGCGGACCAGGATATGTCCATTA
CGACCTCATCTTCGGATCAAAATTCCGGAGAGACCTTTACATCATTGCTG
GAGCAGGAGCGATTACGAATATTCGGTTATATTCGTACGCTTGTACCCCA
CAATTCTGATGCCGAGGACGTATACCAGCATGTATGCCTGACTCTCTGGA
ATAAATTCGACGAGTTTGATCAGGAACGCGACTTCTTTGCCTGGGCCTGT
GGAATTGTATACTTCACCGTCTGCAACTTTCGGAGAAGTAACCAGCGTGA
TCGGCACTATTTCAGCCAGGAGTTAATTGAAACGATGTCACAGGAGCGAA
TGCAACATCTGAGCAACTACAATCTCAGGCTGGAGCTCCTGCAAGACTGT
TTCTACAGCTTGAGCCAGGCGGACCAGGAT
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