prot_M-pyrifera_M_contig105879.1252.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig105879.1252.1
Unique Name	prot_M-pyrifera_M_contig105879.1252.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	108

Homology

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BLAST of mRNA_M-pyrifera_M_contig105879.1252.1 vs. uniprot
Match: A0A3D2IAM2_9BACT (Uncharacterized protein n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3D2IAM2_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.150e-9
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 0

Query:    1 NNLRPFLKDNPEAIAELDKMKSKRTATVVGGVIAVLGLGVALANGPTKPTGETTFDPSSGGLTDKEELTQGGAVGLGIMAVGAIVALATGPAAGKHANRAIKIHNKDL 108
            +NLR  +KDNPEA+ +++    K+   V G V+A  G G+ L     + TG+ TFDP +    DK  L   G +G+G+   G IVA+  G +A K+   A++ +N  L
Sbjct:   77 DNLREEVKDNPEALEQMNIFAKKKKNLVAGYVVA--GSGIVLTAFGLEKTGQQTFDPRTNQYQDKYGLKPIGIMGMGMAFTGIIVAIVNGSSATKYIENAVEAYNNGL 182

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig105879.1252.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig105879.1252.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A3D2IAM2_9BACT	1.150e-9	36.11	Uncharacterized protein n=3 Tax=Bacteroidetes/Chlo...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..24
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 72..93
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 44..71
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 94..108
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 25..43
None	No IPR available	TMHMM	TMhelix		coord: 72..94
None	No IPR available	TMHMM	TMhelix		coord: 28..47

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig105879	contig	M-pyrifera_M_contig105879:308..631 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig105879.1252.1	mRNA_M-pyrifera_M_contig105879.1252.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig105879 308..631 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig105879.1252.1 ID=prot_M-pyrifera_M_contig105879.1252.1|Name=mRNA_M-pyrifera_M_contig105879.1252.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
NNLRPFLKDNPEAIAELDKMKSKRTATVVGGVIAVLGLGVALANGPTKPT
GETTFDPSSGGLTDKEELTQGGAVGLGIMAVGAIVALATGPAAGKHANRA
IKIHNKDL