mRNA_M-pyrifera_M_contig105879.1252.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105879.1252.1
Unique NamemRNA_M-pyrifera_M_contig105879.1252.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105879.1252.1 vs. uniprot
Match: A0A3D2IAM2_9BACT (Uncharacterized protein n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3D2IAM2_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.150e-9
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:    1 NNLRPFLKDNPEAIAELDKMKSKRTATVVGGVIAVLGLGVALANGPTKPTGETTFDPSSGGLTDKEELTQGGAVGLGIMAVGAIVALATGPAAGKHANRAIKIHNKDL 324
            +NLR  +KDNPEA+ +++    K+   V G V+A  G G+ L     + TG+ TFDP +    DK  L   G +G+G+   G IVA+  G +A K+   A++ +N  L
Sbjct:   77 DNLREEVKDNPEALEQMNIFAKKKKNLVAGYVVA--GSGIVLTAFGLEKTGQQTFDPRTNQYQDKYGLKPIGIMGMGMAFTGIIVAIVNGSSATKYIENAVEAYNNGL 182
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105879.1252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D2IAM2_9BACT1.150e-936.11Uncharacterized protein n=3 Tax=Bacteroidetes/Chlo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105879contigM-pyrifera_M_contig105879:308..631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.4618433-CDS-M-pyrifera_M_contig105879:307..6311622815567.4618433-CDS-M-pyrifera_M_contig105879:307..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105879 308..631 -
1692277467.2172718-CDS-M-pyrifera_M_contig105879:307..6311692277467.2172718-CDS-M-pyrifera_M_contig105879:307..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105879 308..631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105879.1252.1prot_M-pyrifera_M_contig105879.1252.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105879 308..631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105879.1252.1

>prot_M-pyrifera_M_contig105879.1252.1 ID=prot_M-pyrifera_M_contig105879.1252.1|Name=mRNA_M-pyrifera_M_contig105879.1252.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
NNLRPFLKDNPEAIAELDKMKSKRTATVVGGVIAVLGLGVALANGPTKPT
GETTFDPSSGGLTDKEELTQGGAVGLGIMAVGAIVALATGPAAGKHANRA
IKIHNKDL
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mRNA from alignment at M-pyrifera_M_contig105879:308..631-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105879.1252.1 ID=mRNA_M-pyrifera_M_contig105879.1252.1|Name=mRNA_M-pyrifera_M_contig105879.1252.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig105879:308..631- (Macrocystis pyrifera P11B4 male)
AACAATCTAAGACCATTCCTGAAAGACAACCCAGAAGCAATTGCTGAACT
AGATAAAATGAAGAGTAAGCGTACTGCAACGGTTGTTGGAGGTGTAATTG
CTGTGTTAGGATTAGGTGTTGCTTTAGCAAATGGCCCTACAAAGCCAACT
GGAGAAACAACCTTCGATCCAAGTTCTGGAGGTCTAACTGATAAAGAGGA
ATTAACACAGGGTGGAGCTGTTGGGTTAGGTATCATGGCTGTGGGTGCTA
TCGTGGCTTTAGCTACTGGACCTGCTGCAGGAAAGCATGCAAATAGAGCT
ATTAAAATACACAATAAAGATTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105879:308..631-

>mRNA_M-pyrifera_M_contig105879.1252.1 ID=mRNA_M-pyrifera_M_contig105879.1252.1|Name=mRNA_M-pyrifera_M_contig105879.1252.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig105879:308..631- (Macrocystis pyrifera P11B4 male)
AACAATCTAAGACCATTCCTGAAAGACAACCCAGAAGCAATTGCTGAACT
AGATAAAATGAAGAGTAAGCGTACTGCAACGGTTGTTGGAGGTGTAATTG
CTGTGTTAGGATTAGGTGTTGCTTTAGCAAATGGCCCTACAAAGCCAACT
GGAGAAACAACCTTCGATCCAAGTTCTGGAGGTCTAACTGATAAAGAGGA
ATTAACACAGGGTGGAGCTGTTGGGTTAGGTATCATGGCTGTGGGTGCTA
TCGTGGCTTTAGCTACTGGACCTGCTGCAGGAAAGCATGCAAATAGAGCT
ATTAAAATACACAATAAAGATTTAAACAATCTAAGACCATTCCTGAAAGA
CAACCCAGAAGCAATTGCTGAACTAGATAAAATGAAGAGTAAGCGTACTG
CAACGGTTGTTGGAGGTGTAATTGCTGTGTTAGGATTAGGTGTTGCTTTA
GCAAATGGCCCTACAAAGCCAACTGGAGAAACAACCTTCGATCCAAGTTC
TGGAGGTCTAACTGATAAAGAGGAATTAACACAGGGTGGAGCTGTTGGGT
TAGGTATCATGGCTGTGGGTGCTATCGTGGCTTTAGCTACTGGACCTGCT
GCAGGAAAGCATGCAAATAGAGCTATTAAAATACACAATAAAGATTTA
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