prot_M-pyrifera_M_contig104341.928.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig104341.928.1
Unique Name	prot_M-pyrifera_M_contig104341.928.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	110

Homology

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BLAST of mRNA_M-pyrifera_M_contig104341.928.1 vs. uniprot
Match: A0A2E7KKI8_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKI8_9PLAN)

HSP 1 Score: 206 bits (523), Expect = 1.780e-59
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0

Query:    2 LSPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIRQLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKVKAFKIKRAGK 110
            LSPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIRQLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKVK FKIKRAGK
Sbjct:    2 LSPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIRQLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKVKDFKIKRAGK 110

[Close]

BLAST of mRNA_M-pyrifera_M_contig104341.928.1 vs. uniprot
Match: A0A518ABH1_9PLAN (Tetratricopeptide repeat protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ABH1_9PLAN)

HSP 1 Score: 149 bits (376), Expect = 1.590e-39
Identity = 72/109 (66.06%), Postives = 93/109 (85.32%), Query Frame = 0

Query:    2 LSPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIRQLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKVKAFKIKRAGK 110
            LSP+QKN++RSTLL+ V++ +LALL  RQ +   QQQA+R+VK  AEIRQ GYDDP RR+ +PL++PDYGDGPV+LLTG+ +ELS+DLY+ ASQASGKVK+ K+KRAGK
Sbjct:    2 LSPLQKNLLRSTLLVFVMLGMLALLISRQKKHVRQQQADREVKATAEIRQRGYDDPRRRSEKPLDFPDYGDGPVYLLTGDCKELSEDLYQVASQASGKVKSLKLKRAGK 110

[Close]

BLAST of mRNA_M-pyrifera_M_contig104341.928.1 vs. uniprot
Match: A0A517RKU5_9PLAN (Tetratricopeptide repeat protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RKU5_9PLAN)

HSP 1 Score: 114 bits (286), Expect = 2.180e-27
Identity = 56/108 (51.85%), Postives = 80/108 (74.07%), Query Frame = 0

Query:    3 SPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIRQLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKVKAFKIKRAGK 110
            S +Q  ++R TLL L+L+ALLA   F +D+ A Q++A+++ K+AAEIR+LGY D  RRA +PL+ PDYG+GPV+L  G+Y ELSQD+Y+ A +A  K K  K+ +AGK
Sbjct:    3 SLLQNTLVRFTLLFLILLALLAAFVFTKDKEARQREADKEYKIAAEIRRLGYGDSKRRAEKPLDIPDYGNGPVYLFNGDYLELSQDIYQVARKAREKTKELKLDQAGK 110

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig104341.928.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig104341.928.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A2E7KKI8_9PLAN	1.780e-59	99.08	Uncharacterized protein n=5 Tax=Gimesia TaxID=1649...	[more]
A0A518ABH1_9PLAN	1.590e-39	66.06	Tetratricopeptide repeat protein n=3 Tax=Gimesia p...	[more]
A0A517RKU5_9PLAN	2.180e-27	51.85	Tetratricopeptide repeat protein n=1 Tax=Gimesia a...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..110
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..28
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 10..28

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig104341	contig	M-pyrifera_M_contig104341:3..332 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig104341.928.1	mRNA_M-pyrifera_M_contig104341.928.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig104341 3..332 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig104341.928.1 ID=prot_M-pyrifera_M_contig104341.928.1|Name=mRNA_M-pyrifera_M_contig104341.928.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
VLSPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIR
QLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKV
KAFKIKRAGK