mRNA_M-pyrifera_M_contig104341.928.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104341.928.1
Unique NamemRNA_M-pyrifera_M_contig104341.928.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104341.928.1 vs. uniprot
Match: A0A2E7KKI8_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKI8_9PLAN)

HSP 1 Score: 206 bits (523), Expect = 1.780e-59
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 1 
Query:    4 LSPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIRQLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKVKAFKIKRAGK 330
            LSPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIRQLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKVK FKIKRAGK
Sbjct:    2 LSPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIRQLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKVKDFKIKRAGK 110
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BLAST of mRNA_M-pyrifera_M_contig104341.928.1 vs. uniprot
Match: A0A518ABH1_9PLAN (Tetratricopeptide repeat protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ABH1_9PLAN)

HSP 1 Score: 149 bits (376), Expect = 1.590e-39
Identity = 72/109 (66.06%), Postives = 93/109 (85.32%), Query Frame = 1 
Query:    4 LSPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIRQLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKVKAFKIKRAGK 330
            LSP+QKN++RSTLL+ V++ +LALL  RQ +   QQQA+R+VK  AEIRQ GYDDP RR+ +PL++PDYGDGPV+LLTG+ +ELS+DLY+ ASQASGKVK+ K+KRAGK
Sbjct:    2 LSPLQKNLLRSTLLVFVMLGMLALLISRQKKHVRQQQADREVKATAEIRQRGYDDPRRRSEKPLDFPDYGDGPVYLLTGDCKELSEDLYQVASQASGKVKSLKLKRAGK 110
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BLAST of mRNA_M-pyrifera_M_contig104341.928.1 vs. uniprot
Match: A0A517RKU5_9PLAN (Tetratricopeptide repeat protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RKU5_9PLAN)

HSP 1 Score: 114 bits (286), Expect = 2.180e-27
Identity = 56/108 (51.85%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    7 SPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIRQLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKVKAFKIKRAGK 330
            S +Q  ++R TLL L+L+ALLA   F +D+ A Q++A+++ K+AAEIR+LGY D  RRA +PL+ PDYG+GPV+L  G+Y ELSQD+Y+ A +A  K K  K+ +AGK
Sbjct:    3 SLLQNTLVRFTLLFLILLALLAAFVFTKDKEARQREADKEYKIAAEIRRLGYGDSKRRAEKPLDIPDYGNGPVYLFNGDYLELSQDIYQVARKAREKTKELKLDQAGK 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104341.928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7KKI8_9PLAN1.780e-5999.08Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A518ABH1_9PLAN1.590e-3966.06Tetratricopeptide repeat protein n=3 Tax=Gimesia p... [more]
A0A517RKU5_9PLAN2.180e-2751.85Tetratricopeptide repeat protein n=1 Tax=Gimesia a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104341contigM-pyrifera_M_contig104341:3..332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.1819916-CDS-M-pyrifera_M_contig104341:2..3321622815550.1819916-CDS-M-pyrifera_M_contig104341:2..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104341 3..332 -
1692277459.5066307-CDS-M-pyrifera_M_contig104341:2..3321692277459.5066307-CDS-M-pyrifera_M_contig104341:2..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104341 3..332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104341.928.1prot_M-pyrifera_M_contig104341.928.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104341 3..332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104341.928.1

>prot_M-pyrifera_M_contig104341.928.1 ID=prot_M-pyrifera_M_contig104341.928.1|Name=mRNA_M-pyrifera_M_contig104341.928.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
VLSPVQKNVIRSTLLILVLVALLALLFFRQDERAAQQQANRDVKVAAEIR
QLGYDDPARRAARPLEYPDYGDGPVFLLTGNYRELSQDLYEEASQASGKV
KAFKIKRAGK
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mRNA from alignment at M-pyrifera_M_contig104341:3..332-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104341.928.1 ID=mRNA_M-pyrifera_M_contig104341.928.1|Name=mRNA_M-pyrifera_M_contig104341.928.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig104341:3..332- (Macrocystis pyrifera P11B4 male)
GTGCTCTCTCCAGTGCAAAAGAATGTCATCCGTTCGACTCTGTTGATTCT
GGTATTGGTGGCTCTGCTGGCCCTGCTTTTTTTCAGGCAGGATGAACGTG
CTGCCCAGCAACAGGCGAACCGCGATGTCAAGGTGGCAGCGGAGATCCGT
CAGCTCGGATATGATGATCCCGCCCGTCGTGCTGCCAGACCACTGGAGTA
TCCCGATTACGGCGACGGTCCCGTTTTTCTGTTGACCGGAAATTATCGGG
AGCTCAGCCAAGACCTCTACGAGGAAGCCAGCCAGGCGAGCGGTAAGGTC
AAAGCGTTCAAAATCAAACGCGCGGGGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104341:3..332-

>mRNA_M-pyrifera_M_contig104341.928.1 ID=mRNA_M-pyrifera_M_contig104341.928.1|Name=mRNA_M-pyrifera_M_contig104341.928.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig104341:3..332- (Macrocystis pyrifera P11B4 male)
GTGCTCTCTCCAGTGCAAAAGAATGTCATCCGTTCGACTCTGTTGATTCT
GGTATTGGTGGCTCTGCTGGCCCTGCTTTTTTTCAGGCAGGATGAACGTG
CTGCCCAGCAACAGGCGAACCGCGATGTCAAGGTGGCAGCGGAGATCCGT
CAGCTCGGATATGATGATCCCGCCCGTCGTGCTGCCAGACCACTGGAGTA
TCCCGATTACGGCGACGGTCCCGTTTTTCTGTTGACCGGAAATTATCGGG
AGCTCAGCCAAGACCTCTACGAGGAAGCCAGCCAGGCGAGCGGTAAGGTC
AAAGCGTTCAAAATCAAACGCGCGGGGAAAGTGCTCTCTCCAGTGCAAAA
GAATGTCATCCGTTCGACTCTGTTGATTCTGGTATTGGTGGCTCTGCTGG
CCCTGCTTTTTTTCAGGCAGGATGAACGTGCTGCCCAGCAACAGGCGAAC
CGCGATGTCAAGGTGGCAGCGGAGATCCGTCAGCTCGGATATGATGATCC
CGCCCGTCGTGCTGCCAGACCACTGGAGTATCCCGATTACGGCGACGGTC
CCGTTTTTCTGTTGACCGGAAATTATCGGGAGCTCAGCCAAGACCTCTAC
GAGGAAGCCAGCCAGGCGAGCGGTAAGGTCAAAGCGTTCAAAATCAAACG
CGCGGGGAAA
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