prot_M-pyrifera_M_contig103437.736.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig103437.736.1
Unique Nameprot_M-pyrifera_M_contig103437.736.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length104
Homology
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BLAST of mRNA_M-pyrifera_M_contig103437.736.1 vs. uniprot
Match: UPI001D08D851 (trafficking protein particle complex subunit 3 n=2 Tax=Coccinellini TaxID=263631 RepID=UPI001D08D851)

HSP 1 Score: 49.7 bits (117), Expect = 5.180e-5
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 0 
Query:    5 ELLQLTFGAIAARIVREAEGVDSANAQLRALGASMGGRLADDFFASRAAAAALPRCSTFRDAMQSLASYALPQYLGVAGAVGRW 88
            EL+ LT+GA+ A++V++AE  D    QL  LG +MG RL +DF A         RC   +D    + S A   YLG+   V  W
Sbjct:   16 ELVTLTYGALVAQMVKDAENTDDVGKQLERLGYNMGVRLIEDFLAKTGTG----RCIDLKDTADKIQS-AFKMYLGLQPNVANW 94
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103437.736.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001D08D8515.180e-538.10trafficking protein particle complex subunit 3 n=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1380.20coord: 3..104
e-value: 3.5E-16
score: 61.1
NoneNo IPR availablePANTHERPTHR13048:SF0TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 4..104
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 8..80
e-value: 2.8E-6
score: 27.1
IPR016721Bet3 familyPANTHERPTHR13048TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3coord: 4..104
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilySUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 3..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103437contigM-pyrifera_M_contig103437:1..360 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103437.736.1mRNA_M-pyrifera_M_contig103437.736.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig103437 1..360 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig103437.736.1 ID=prot_M-pyrifera_M_contig103437.736.1|Name=mRNA_M-pyrifera_M_contig103437.736.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
LQSLELLQLTFGAIAARIVREAEGVDSANAQLRALGASMGGRLADDFFAS
RAAAAALPRCSTFRDAMQSLASYALPQYLGVAGAVGRWGEGDGSVELELE
RDVL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007194TRAPP_component
IPR016721Bet3
IPR024096NO_sig/Golgi_transp_ligand-bd