prot_M-pyrifera_M_contig103432.733.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig103432.733.1
Unique Nameprot_M-pyrifera_M_contig103432.733.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length173
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103432.733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 121..162
e-value: 3.6E-6
score: 26.4
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 35..169
e-value: 3.3E-15
score: 54.1
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 99..172
e-value: 5.5E-7
score: 31.0
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 23..77
e-value: 2.1E-5
score: 24.2
NoneNo IPR availableGENE3D1.10.1740.10coord: 11..88
e-value: 1.9E-5
score: 26.5
NoneNo IPR availablePANTHERPTHR43133:SF6coord: 27..170
IPR039425RNA polymerase sigma-70 likePANTHERPTHR43133FAMILY NOT NAMEDcoord: 27..170
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 24..97
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 93..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103432contigM-pyrifera_M_contig103432:89..607 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103432.733.1mRNA_M-pyrifera_M_contig103432.733.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig103432 89..607 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig103432.733.1 ID=prot_M-pyrifera_M_contig103432.733.1|Name=mRNA_M-pyrifera_M_contig103432.733.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
MSVCTTTETPQETIREFVSNPKFRSWLFGRVHRRIEKWEAAEDVTQNILL
EMLKRAHTYNPAYKPMTFANLCMRHQMWLWVQAEQRAKPRQQVDVNPIDE
CEPIEIVTERHDQVRKVKSVLGHFPKRIRDAFVERFSGQSTLREIGERLS
VSRQAVHQMLSAPLAMIREVFAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007630RNA_pol_sigma70_r4
IPR014284RNA_pol_sigma-70_dom
IPR036388WH-like_DNA-bd_sf
IPR007627RNA_pol_sigma70_r2
IPR039425RNA_pol_sigma-70
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3/r4-like