prot_M-pyrifera_M_contig103291.694.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig103291.694.1
Unique Nameprot_M-pyrifera_M_contig103291.694.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length97
Homology
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A5A8CW99_CAFRO (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW99_CAFRO)

HSP 1 Score: 97.8 bits (242), Expect = 1.420e-24
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 0
Query:    1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKK 91
            M G +PV LL EA GHPV +ELK GELY+G L E++ ++N  +     TA+DGR+  +E+V LRG+QVRL  LPD LQS+P+F ++  A K
Sbjct:    1 MDGGVPVKLLHEAQGHPVTLELKNGELYRGVLVESDSAMNCQMRNVVFTARDGRRTRMENVFLRGTQVRLALLPDILQSAPMFKKLAEAAK 91          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A6G0XIN2_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIN2_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.000e-24
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 0
Query:    5 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKAA 97
            +P++LL E  GH + +ELK GE+Y+G L E+E+S+N  L++ TLT++DG+   +E V +RGSQV+L  LPD LQ SPLF +V+  KK  EK A
Sbjct:    7 VPLSLLHEGEGHSITLELKNGEIYRGHLVESEDSMNCQLKQVTLTSRDGQIHRLEQVYIRGSQVKLFILPDMLQKSPLFKKVQALKKPDEKKA 99          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A7S1C9Q8_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9Q8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.050e-22
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 0
Query:    1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEK 95
            MAG IPV LL E  G+PV VEL+ GE+Y+G L   E+++N+ L   T  A+DGR   +EHV LRGSQ+R V LPD L+ +P+F +V+ AK + EK
Sbjct:    1 MAG-IPVKLLHEGEGNPVTVELRNGEIYRGQLDAAEDNMNVQLSGVTFRARDGRISKLEHVYLRGSQIRFVVLPDMLKEAPIFKKVQSAKTKNEK 94          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: F6KSS7_PHYPO (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Physarum polycephalum TaxID=5791 RepID=F6KSS7_PHYPO)

HSP 1 Score: 92.8 bits (229), Expect = 3.510e-22
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0
Query:    1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAK 90
            M+  +P+ LL EA GH V +ELKTGE+Y+G L E+E+++N  L   TLTA+DGR  ++EH  +RGS++R + LPD L+++P+F RV  +K
Sbjct:    1 MSIGVPIKLLHEAEGHIVTIELKTGEVYRGQLIESEDNMNCQLGNITLTARDGRISNLEHAYVRGSKIRFLILPDMLKNAPMFKRVEASK 90          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A485LB96_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB96_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.560e-22
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 0
Query:    5 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKAA 97
            +P++LL E  GH + +ELK GE+Y+G L E+E+S+N  L++ TLT +DG+   +E V +RGSQV+L  LPD LQ SPLF +V+  KK  EKA+
Sbjct:    7 VPLSLLHEGEGHQITLELKNGEVYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYVRGSQVKLFILPDMLQKSPLFKKVQALKKP-EKAS 98          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A8J8NI15_HALGN (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NI15_HALGN)

HSP 1 Score: 91.3 bits (225), Expect = 6.970e-22
Identity = 43/96 (44.79%), Postives = 67/96 (69.79%), Query Frame = 0
Query:    1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKA 96
            M+  +P+ LL EA  H +  ELK+GELY+G+L E E+++NM L+   +TA+DG+Q  ++ V +RGSQVR V +PD L++SP+F R+    K+ + A
Sbjct:    1 MSIGVPIKLLHEAENHVITCELKSGELYRGYLMEAEDTMNMRLDDVYVTARDGKQYHLDQVFVRGSQVRFVVIPDMLKNSPMFKRISNQAKKGKNA 96          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A2R5GRQ4_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRQ4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.540e-21
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 0
Query:    4 SIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRV 86
            S+P+ LL E IGHPV VE+K GE Y+G L E E ++N+ L  AT TA++G++R +EH  LRG+ V+ + LPDFL+ + +F  V
Sbjct:    8 SVPIRLLLEGIGHPVTVEMKNGESYRGQLVEAETTMNLQLSGATHTARNGQRRKLEHAYLRGTSVKFIVLPDFLREATIFKSV 90          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A7S2S181_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.320e-21
Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = 0
Query:    5 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQ 92
            +P+ +L E  GH + VEL+ GE+Y+G L E E+++N  LE  T+TA+DGR   +E V +RGSQV+L+ LP+ L+ SP F +V+  KK+
Sbjct:    8 VPIRILHEGEGHTISVELRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSPAFNKVQTMKKK 95          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A3R7A9P8_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A9P8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.010e-21
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 0
Query:    5 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKK 91
            +P++LL E  GH + +ELK GE+Y+G L E+E+S+N  L++ TLT +DG+   +E V +RGSQV+L  LPD LQ SPLF +V+  KK
Sbjct:  105 VPLSLLHEGEGHAITLELKNGEIYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYIRGSQVKLFILPDLLQKSPLFKKVQALKK 191          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A5K1HM69_9MAGN (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1HM69_9MAGN)

HSP 1 Score: 89.4 bits (220), Expect = 5.400e-21
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0
Query:    6 PVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQ 92
            PV LL EA  H V VE+K+GE+Y+GFL + E+++N+ L+  T+ +KDGR   VE V LRGSQ+R V +P   +++P+F RVR   KQ
Sbjct:   11 PVKLLHEAKHHVVTVEMKSGEMYRGFLADAEDTMNVRLDDVTMFSKDGRSMPVEQVYLRGSQIRFVIVPSMFKNAPMFKRVRAQAKQ 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CW99_CAFRO1.420e-2451.65Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Cafe... [more]
A0A6G0XIN2_9STRA9.000e-2450.54Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Apha... [more]
A0A7S1C9Q8_9STRA3.050e-2251.58Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Bico... [more]
F6KSS7_PHYPO3.510e-2248.89Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Phys... [more]
A0A485LB96_9STRA4.560e-2250.54Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Apha... [more]
A0A8J8NI15_HALGN6.970e-2244.79Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Halt... [more]
A0A2R5GRQ4_9STRA2.540e-2149.40Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hond... [more]
A0A7S2S181_9STRA3.320e-2146.59Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhiz... [more]
A0A3R7A9P8_9STRA4.010e-2150.57Sm domain-containing protein n=2 Tax=Aphanomyces i... [more]
A0A5K1HM69_9MAGN5.400e-2149.43Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 8..73
e-value: 1.7E-14
score: 64.2
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 9..72
e-value: 1.3E-15
score: 56.8
NoneNo IPR availableGENE3D2.30.30.100coord: 2..84
e-value: 4.6E-24
score: 85.7
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 1..92
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..97
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..92
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103291contigM-pyrifera_M_contig103291:185..475 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103291.694.1mRNA_M-pyrifera_M_contig103291.694.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig103291 185..475 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig103291.694.1 ID=prot_M-pyrifera_M_contig103291.694.1|Name=mRNA_M-pyrifera_M_contig103291.694.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTA
KDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf