prot_M-pyrifera_M_contig102442.517.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig102442.517.1
Unique Nameprot_M-pyrifera_M_contig102442.517.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length196
Homology
BLAST of mRNA_M-pyrifera_M_contig102442.517.1 vs. uniprot
Match: A0A0U3CG72_9EURY (Adhesin-like protein with cysteine protease domain n=3 Tax=Methanobrevibacter TaxID=2172 RepID=A0A0U3CG72_9EURY)

HSP 1 Score: 57.0 bits (136), Expect = 4.510e-6
Identity = 50/149 (33.56%), Postives = 70/149 (46.98%), Query Frame = 0
Query:    4 GSAISLAGGQAFAISNCTFTNNHAGSNSGGAVFYQQA------------IGQEG--------ELRVEGSVFSGNSGS-TGGAIYHFGSKLIVTDSAFLDNTVTNYGGAIFIYKVGYAGVASFTNSLFLANTAQVAGGAVYSVQDLIVTN 131
            G AI+        I +  F N+ +  +SGGA++++ A             GQ G           +  S F+GN  S  GGAIY    K  V D  F +N   N GGAIF+     A     T SLF++NTA V GG +YS+ ++I +N
Sbjct:  227 GGAIAAGANSKIEIYDSDFINDKSIKDSGGAIYFRYADVKISNSNFINCYGQFGGAICDLGANTTISNSKFTGNRASYRGGAIYSLYGKFFVNDCDFRNNHGKN-GGAIFLDN---ATSHYITTSLFISNTADVCGGGIYSILNIIPSN 371          
BLAST of mRNA_M-pyrifera_M_contig102442.517.1 vs. uniprot
Match: UPI001783681C (hypothetical protein n=1 Tax=Pseudomarimonas arenosa TaxID=2774145 RepID=UPI001783681C)

HSP 1 Score: 56.2 bits (134), Expect = 6.840e-6
Identity = 56/203 (27.59%), Postives = 89/203 (43.84%), Query Frame = 0
Query:   19 NCTFTNNHAG-----SNSGGAVFYQQAIGQEGELRVEGSVFSGNSGSTGGAIYHFGS-KLIVTDSAFLDNTVTNYGG----AIFIYKVGYAG---VASFTNSLFLANTAQVAGGAVYSV----------QDLIVTNFTACALAYNSCGSGGGGAFTALGGEHSMSHVVLLDNAAKNGGALYISSSVD--LDSVTFVGNNATNG 196
            NC F +N A       + GG  FY + + +   + +   VFSGNSGS GGA+Y  GS +L + DS F DN     GG          +G  G   +     +  + N++   GGA +SV          +D++V      + + +S      G      G  ++  V ++DN A+  G L+++      + + TF GN A  G
Sbjct:  161 NCRFDDNVAALVGSAQDDGGGAFYGEQLNR---IDIGNCVFSGNSGSNGGALYSLGSLRLNIVDSRFEDNHAIGSGGNPXXXXXXXXIGVDGAERLVDICRTQLVDNSSNAFGGAFFSVMYDMLSRSRFEDVLVQGNRQLSSSEHS------GGLYLQDGPWALERVSVIDNEARGFGGLFVAGDAPGTIRNATFSGNVARTG 354          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102442.517.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0U3CG72_9EURY4.510e-633.56Adhesin-like protein with cysteine protease domain... [more]
UPI001783681C6.840e-627.59hypothetical protein n=1 Tax=Pseudomarimonas areno... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 19..36
e-value: 0.055
score: 14.0
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..196
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 7..194

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102442contigM-pyrifera_M_contig102442:26..613 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102442.517.1mRNA_M-pyrifera_M_contig102442.517.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig102442 26..613 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig102442.517.1 ID=prot_M-pyrifera_M_contig102442.517.1|Name=mRNA_M-pyrifera_M_contig102442.517.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=196bp
MTVGSAISLAGGQAFAISNCTFTNNHAGSNSGGAVFYQQAIGQEGELRVE
GSVFSGNSGSTGGAIYHFGSKLIVTDSAFLDNTVTNYGGAIFIYKVGYAG
VASFTNSLFLANTAQVAGGAVYSVQDLIVTNFTACALAYNSCGSGGGGAF
TALGGEHSMSHVVLLDNAAKNGGALYISSSVDLDSVTFVGNNATNG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence