mRNA_M-pyrifera_M_contig102442.517.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102442.517.1
Unique NamemRNA_M-pyrifera_M_contig102442.517.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig102442.517.1 vs. uniprot
Match: A0A0U3CG72_9EURY (Adhesin-like protein with cysteine protease domain n=3 Tax=Methanobrevibacter TaxID=2172 RepID=A0A0U3CG72_9EURY)

HSP 1 Score: 57.0 bits (136), Expect = 4.510e-6
Identity = 50/149 (33.56%), Postives = 70/149 (46.98%), Query Frame = 1 
Query:   10 GSAISLAGGQAFAISNCTFTNNHAGSNSGGAVFYQQA------------IGQEG--------ELRVEGSVFSGNSGS-TGGAIYHFGSKLIVTDSAFLDNTVTNYGGAIFIYKVGYAGVASFTNSLFLANTAQVAGGAVYSVQDLIVTN 393
            G AI+        I +  F N+ +  +SGGA++++ A             GQ G           +  S F+GN  S  GGAIY    K  V D  F +N   N GGAIF+     A     T SLF++NTA V GG +YS+ ++I +N
Sbjct:  227 GGAIAAGANSKIEIYDSDFINDKSIKDSGGAIYFRYADVKISNSNFINCYGQFGGAICDLGANTTISNSKFTGNRASYRGGAIYSLYGKFFVNDCDFRNNHGKN-GGAIFLDN---ATSHYITTSLFISNTADVCGGGIYSILNIIPSN 371
[Close]
BLAST of mRNA_M-pyrifera_M_contig102442.517.1 vs. uniprot
Match: UPI001783681C (hypothetical protein n=1 Tax=Pseudomarimonas arenosa TaxID=2774145 RepID=UPI001783681C)

HSP 1 Score: 56.2 bits (134), Expect = 6.840e-6
Identity = 56/203 (27.59%), Postives = 89/203 (43.84%), Query Frame = 1 
Query:   55 NCTFTNNHAG-----SNSGGAVFYQQAIGQEGELRVEGSVFSGNSGSTGGAIYHFGS-KLIVTDSAFLDNTVTNYGG----AIFIYKVGYAG---VASFTNSLFLANTAQVAGGAVYSV----------QDLIVTNFTACALAYNSCGSGGGGAFTALGGEHSMSHVVLLDNAAKNGGALYISSSVD--LDSVTFVGNNATNG 588
            NC F +N A       + GG  FY + + +   + +   VFSGNSGS GGA+Y  GS +L + DS F DN     GG          +G  G   +     +  + N++   GGA +SV          +D++V      + + +S      G      G  ++  V ++DN A+  G L+++      + + TF GN A  G
Sbjct:  161 NCRFDDNVAALVGSAQDDGGGAFYGEQLNR---IDIGNCVFSGNSGSNGGALYSLGSLRLNIVDSRFEDNHAIGSGGNPXXXXXXXXIGVDGAERLVDICRTQLVDNSSNAFGGAFFSVMYDMLSRSRFEDVLVQGNRQLSSSEHS------GGLYLQDGPWALERVSVIDNEARGFGGLFVAGDAPGTIRNATFSGNVARTG 354
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102442.517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0U3CG72_9EURY4.510e-633.56Adhesin-like protein with cysteine protease domain... [more]
UPI001783681C6.840e-627.59hypothetical protein n=1 Tax=Pseudomarimonas areno... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102442contigM-pyrifera_M_contig102442:26..613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue7.9e-07
Seed eggNOG ortholog118166.JH976537_gene836
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Hemolysin-type calcium-binding repeat (2 copies)
EggNOG OGs1G0ZC@1117,1H8KD@1150,COG2931@1,COG2931@2
COG Functional cat.Q
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
Exons1
Model size588
Cds size588
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.784582-CDS-M-pyrifera_M_contig102442:25..6131622815526.784582-CDS-M-pyrifera_M_contig102442:25..613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102442 26..613 -
1692277449.6502817-CDS-M-pyrifera_M_contig102442:25..6131692277449.6502817-CDS-M-pyrifera_M_contig102442:25..613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102442 26..613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102442.517.1prot_M-pyrifera_M_contig102442.517.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102442 26..613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102442.517.1

>prot_M-pyrifera_M_contig102442.517.1 ID=prot_M-pyrifera_M_contig102442.517.1|Name=mRNA_M-pyrifera_M_contig102442.517.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=196bp
MTVGSAISLAGGQAFAISNCTFTNNHAGSNSGGAVFYQQAIGQEGELRVE
GSVFSGNSGSTGGAIYHFGSKLIVTDSAFLDNTVTNYGGAIFIYKVGYAG
VASFTNSLFLANTAQVAGGAVYSVQDLIVTNFTACALAYNSCGSGGGGAF
TALGGEHSMSHVVLLDNAAKNGGALYISSSVDLDSVTFVGNNATNG
back to top

mRNA from alignment at M-pyrifera_M_contig102442:26..613-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102442.517.1 ID=mRNA_M-pyrifera_M_contig102442.517.1|Name=mRNA_M-pyrifera_M_contig102442.517.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig102442:26..613- (Macrocystis pyrifera P11B4 male)
ATGACGGTGGGCTCTGCCATCAGCCTTGCAGGGGGCCAGGCGTTCGCCAT
CTCCAACTGTACTTTCACAAACAATCACGCAGGCTCCAATTCTGGCGGAG
CAGTCTTCTACCAGCAGGCAATTGGCCAAGAGGGAGAGTTGAGGGTGGAG
GGCTCCGTATTCAGCGGCAACAGTGGCTCCACTGGCGGTGCCATCTACCA
CTTTGGCTCCAAGCTCATTGTGACCGACTCCGCATTCCTGGATAACACTG
TCACCAACTACGGTGGCGCCATTTTCATTTACAAGGTCGGTTACGCAGGC
GTGGCCTCCTTTACCAACTCTCTCTTTCTCGCCAACACTGCCCAGGTCGC
AGGTGGCGCTGTGTATTCAGTCCAGGACCTGATTGTGACCAACTTCACTG
CGTGTGCCTTGGCGTACAACAGCTGTGGATCTGGTGGTGGCGGGGCTTTC
ACCGCACTTGGTGGTGAGCACTCCATGTCACATGTTGTCCTCCTCGATAA
CGCTGCGAAGAATGGCGGTGCGCTGTATATCTCTAGCAGTGTCGATTTGG
ACTCTGTCACTTTTGTAGGCAACAACGCAACCAATGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102442:26..613-

>mRNA_M-pyrifera_M_contig102442.517.1 ID=mRNA_M-pyrifera_M_contig102442.517.1|Name=mRNA_M-pyrifera_M_contig102442.517.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1176bp|location=Sequence derived from alignment at M-pyrifera_M_contig102442:26..613- (Macrocystis pyrifera P11B4 male)
ATGACGGTGGGCTCTGCCATCAGCCTTGCAGGGGGCCAGGCGTTCGCCAT
CTCCAACTGTACTTTCACAAACAATCACGCAGGCTCCAATTCTGGCGGAG
CAGTCTTCTACCAGCAGGCAATTGGCCAAGAGGGAGAGTTGAGGGTGGAG
GGCTCCGTATTCAGCGGCAACAGTGGCTCCACTGGCGGTGCCATCTACCA
CTTTGGCTCCAAGCTCATTGTGACCGACTCCGCATTCCTGGATAACACTG
TCACCAACTACGGTGGCGCCATTTTCATTTACAAGGTCGGTTACGCAGGC
GTGGCCTCCTTTACCAACTCTCTCTTTCTCGCCAACACTGCCCAGGTCGC
AGGTGGCGCTGTGTATTCAGTCCAGGACCTGATTGTGACCAACTTCACTG
CGTGTGCCTTGGCGTACAACAGCTGTGGATCTGGTGGTGGCGGGGCTTTC
ACCGCACTTGGTGGTGAGCACTCCATGTCACATGTTGTCCTCCTCGATAA
CGCTGCGAAGAATGGCGGTGCGCTGTATATCTCTAGCAGTGTCGATTTGG
ACTCTGTCACTTTTGTAGGCAACAACGCAACCAATGGCATGACGGTGGGC
TCTGCCATCAGCCTTGCAGGGGGCCAGGCGTTCGCCATCTCCAACTGTAC
TTTCACAAACAATCACGCAGGCTCCAATTCTGGCGGAGCAGTCTTCTACC
AGCAGGCAATTGGCCAAGAGGGAGAGTTGAGGGTGGAGGGCTCCGTATTC
AGCGGCAACAGTGGCTCCACTGGCGGTGCCATCTACCACTTTGGCTCCAA
GCTCATTGTGACCGACTCCGCATTCCTGGATAACACTGTCACCAACTACG
GTGGCGCCATTTTCATTTACAAGGTCGGTTACGCAGGCGTGGCCTCCTTT
ACCAACTCTCTCTTTCTCGCCAACACTGCCCAGGTCGCAGGTGGCGCTGT
GTATTCAGTCCAGGACCTGATTGTGACCAACTTCACTGCGTGTGCCTTGG
CGTACAACAGCTGTGGATCTGGTGGTGGCGGGGCTTTCACCGCACTTGGT
GGTGAGCACTCCATGTCACATGTTGTCCTCCTCGATAACGCTGCGAAGAA
TGGCGGTGCGCTGTATATCTCTAGCAGTGTCGATTTGGACTCTGTCACTT
TTGTAGGCAACAACGCAACCAATGGC
back to top