prot_M-pyrifera_M_contig101577.325.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig101577.325.1
Unique Name	prot_M-pyrifera_M_contig101577.325.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	133

Homology

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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: UPI0014215686 (50S ribosomal protein L3 n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI0014215686)

HSP 1 Score: 204 bits (520), Expect = 2.870e-64
Identity = 98/131 (74.81%), Postives = 113/131 (86.26%), Query Frame = 0

Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNKL 131
            REFRTDGEDH  EVGQ LT + LA++  VDVI  SKGRGTAGVMKRHNFSGQRA+HGVKRVHRHGGSIGMSADP+RV KGTRM GR+GNA+VTVRNL+VV++D E+NM+LV G VPGP G +V +R T+KL
Sbjct:  108 REFRTDGEDHSLEVGQTLTADFLADLKRVDVIGTSKGRGTAGVMKRHNFSGQRATHGVKRVHRHGGSIGMSADPSRVLKGTRMAGRYGNARVTVRNLQVVKVDAENNMILVKGAVPGPKGGYVVVRHTSKL 238

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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A517ZWT0_9PLAN (50S ribosomal protein L3 n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZWT0_9PLAN)

HSP 1 Score: 202 bits (515), Expect = 1.060e-63
Identity = 99/132 (75.00%), Postives = 114/132 (86.36%), Query Frame = 0

Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNKLG 132
            REFRTDGE    EVGQELTV+L A+VS+VDVI+ SKGRGTAGVMKRHNF+GQRASHGVKRVHRHGGSIG SADPARV KGT+M GR+GNA++TVRNL++ R+D E+ +LLV G VPGP G +V IR TNKLG
Sbjct:  100 REFRTDGEGCDCEVGQELTVDLFADVSNVDVIATSKGRGTAGVMKRHNFAGQRASHGVKRVHRHGGSIGQSADPARVIKGTKMAGRYGNARITVRNLELTRVDGENGLLLVAGSVPGPKGGYVMIRETNKLG 231

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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A3B8PQG2_9PLAN (50S ribosomal protein L3 n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8PQG2_9PLAN)

HSP 1 Score: 201 bits (512), Expect = 4.020e-63
Identity = 99/132 (75.00%), Postives = 112/132 (84.85%), Query Frame = 0

Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNKLG 132
            REFR DGE+   EVGQ LTVEL AE+SHVDV+  SKGRG AGVMKRHNF+GQRASHGVKRVHRHGG IGMSADPARV KGTRMPGR GNA+ TVR+++VVR+D E+N +L+ GGVPGP G +V IR TNKLG
Sbjct:  109 REFRVDGENVDLEVGQTLTVELFAEMSHVDVVGTSKGRGFAGVMKRHNFAGQRASHGVKRVHRHGGGIGMSADPARVLKGTRMPGRFGNARSTVRHMQVVRVDAETNSMLIKGGVPGPPGGYVLIRPTNKLG 240

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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A2E8FGN1_9PLAN (50S ribosomal protein L3 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8FGN1_9PLAN)

HSP 1 Score: 200 bits (508), Expect = 1.620e-62
Identity = 99/132 (75.00%), Postives = 113/132 (85.61%), Query Frame = 0

Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNKLG 132
            REFR DGE+   EVGQ LTV+L AE +HVDV+  SKGRGTAGVMKRHNFSGQRASHGVKRVHRH GSIGMSADPARV KGTRM GR+GNA+ TVR+L+VVR+D E+N++LV GGVPGPNG ++ IR TNK G
Sbjct:  109 REFRIDGEEVDLEVGQTLTVDLFAETTHVDVVGTSKGRGTAGVMKRHNFSGQRASHGVKRVHRHAGSIGMSADPARVPKGTRMAGRYGNARSTVRHLQVVRVDNENNVMLVRGGVPGPNGGYLLIRPTNKTG 240

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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: UPI001EE94F7E (50S ribosomal protein L3 n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE94F7E)

HSP 1 Score: 198 bits (503), Expect = 7.050e-62
Identity = 95/130 (73.08%), Postives = 111/130 (85.38%), Query Frame = 0

Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNK 130
            REFRTDGE+HG +VG  LTV  LAE++HVDVI  SKGRGTAGVMKRHNFSGQRASHGVK+VHRH GSIG SADP+RV KGTRM G++GNAQ+TVRNLKVV++  E N++LV G VPGP+G +V +R TNK
Sbjct:  100 REFRTDGEEHGLDVGSVLTVNHLAEIAHVDVIGTSKGRGTAGVMKRHNFSGQRASHGVKKVHRHAGSIGQSADPSRVLKGTRMAGQYGNAQITVRNLKVVKVIEEENLILVGGAVPGPSGGYVLVRPTNK 229

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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A518IKB9_9PLAN (50S ribosomal protein L3 n=19 Tax=Planctomycetaceae TaxID=126 RepID=A0A518IKB9_9PLAN)

HSP 1 Score: 197 bits (502), Expect = 9.400e-62
Identity = 95/130 (73.08%), Postives = 110/130 (84.62%), Query Frame = 0

Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNK 130
            +EFRTDGE+HG EVG ELTV + ++V+H+DVI  SKGRG AGVMKRHNFSGQRASHGVKRVHRHGGSIG SADP+RV KGTRM GR+G  Q+TVR+LKVVR+D E+ +LLV G VPGPNG  + IR TNK
Sbjct:   99 KEFRTDGEEHGCEVGSELTVSVFSDVTHIDVIGTSKGRGFAGVMKRHNFSGQRASHGVKRVHRHGGSIGQSADPSRVMKGTRMGGRYGGKQITVRHLKVVRVDEENGLLLVRGAVPGPNGGDLVIRHTNK 228

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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A3B1DXA9_9ZZZZ (LSU ribosomal protein L3p (L3e) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DXA9_9ZZZZ)

HSP 1 Score: 197 bits (501), Expect = 1.510e-61
Identity = 96/130 (73.85%), Postives = 110/130 (84.62%), Query Frame = 0

Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNK 130
            REFRTDGE+HG EVGQEL   L AE S +DVISISKGRG AGVMKRHNFSGQRA+HGVKRVHRHGGSIGMSADPARV KGTRM GR+G  Q+T+R+L VVR+D E+N++L+ G VPGPNG  V +R+T K
Sbjct:  101 REFRTDGEEHGCEVGQELAAGLFAETSFLDVISISKGRGFAGVMKRHNFSGQRATHGVKRVHRHGGSIGMSADPARVLKGTRMGGRYGGKQITMRHLSVVRVDEENNLILLKGSVPGPNGGVVLLRQTTK 230

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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A517P9I2_9PLAN (50S ribosomal protein L3 n=2 Tax=Alienimonas TaxID=2714737 RepID=A0A517P9I2_9PLAN)

HSP 1 Score: 197 bits (501), Expect = 1.660e-61
Identity = 94/130 (72.31%), Postives = 109/130 (83.85%), Query Frame = 0

Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNK 130
            REFRTDGEDHG  VG ELTVE LAE+  +DV+  SKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIG SADP+RV KGT+MPGR+GN +VTVR L++VR+D E+N +L+ G VPGPNG  V++  T K
Sbjct:  100 REFRTDGEDHGLSVGDELTVEHLAELKRIDVVGTSKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGQSADPSRVMKGTKMPGRYGNDRVTVRFLEIVRVDAENNSVLLRGAVPGPNGGLVELTHTTK 229

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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A836REN6_9PLAN (50S ribosomal protein L3 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836REN6_9PLAN)

HSP 1 Score: 194 bits (492), Expect = 1.700e-61
Identity = 98/131 (74.81%), Postives = 111/131 (84.73%), Query Frame = 0

Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNKL 131
            REFRTDGE    +VG  LTV L AEV +VDVI  SKGRGTAGVMKRHNF GQRA+HGVKRVHRH GSIGMSADP+RV KGTRM GR+G+++VTVR+LKVVRID E+NMLLV G VPGPNG +V IR+TNK+
Sbjct:    8 REFRTDGEAIDLKVGDALTVGLFAEVPYVDVIGTSKGRGTAGVMKRHNFRGQRATHGVKRVHRHPGSIGMSADPSRVLKGTRMAGRYGHSRVTVRHLKVVRIDEENNMLLVKGAVPGPNGGYVVIRQTNKV 138

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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A350K4F0_9PLAN (50S ribosomal protein L3 (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K4F0_9PLAN)

HSP 1 Score: 192 bits (488), Expect = 5.690e-61
Identity = 95/130 (73.08%), Postives = 108/130 (83.08%), Query Frame = 0

Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNK 130
            +EFRTDGE HG EVG ELTV + A+V  +DVI  SKGRG AGVMKRHNFSGQRA+HGVKRVHRHGGSIGMSADP+RV KGTRM GR+G  Q+TVR+LKVVR+D E+ +LLV G VPGPNG  + IR TNK
Sbjct:    2 KEFRTDGEVHGCEVGGELTVSVFADVPFIDVIGTSKGRGFAGVMKRHNFSGQRATHGVKRVHRHGGSIGMSADPSRVLKGTRMGGRYGGKQITVRHLKVVRVDEENGVLLVRGAVPGPNGGDLVIRHTNK 131

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI0014215686	2.870e-64	74.81	50S ribosomal protein L3 n=1 Tax=Rubinisphaera sp....	[more]
A0A517ZWT0_9PLAN	1.060e-63	75.00	50S ribosomal protein L3 n=3 Tax=Symmachiella TaxI...	[more]
A0A3B8PQG2_9PLAN	4.020e-63	75.00	50S ribosomal protein L3 n=2 Tax=Planctomycetaceae...	[more]
A0A2E8FGN1_9PLAN	1.620e-62	75.00	50S ribosomal protein L3 n=1 Tax=Planctomycetaceae...	[more]
UPI001EE94F7E	7.050e-62	73.08	50S ribosomal protein L3 n=1 Tax=Rubinisphaera sp....	[more]
A0A518IKB9_9PLAN	9.400e-62	73.08	50S ribosomal protein L3 n=19 Tax=Planctomycetacea...	[more]
A0A3B1DXA9_9ZZZZ	1.510e-61	73.85	LSU ribosomal protein L3p (L3e) n=1 Tax=hydrotherm...	[more]
A0A517P9I2_9PLAN	1.660e-61	72.31	50S ribosomal protein L3 n=2 Tax=Alienimonas TaxID...	[more]
A0A836REN6_9PLAN	1.700e-61	74.81	50S ribosomal protein L3 n=1 Tax=Planctomycetaceae...	[more]
A0A350K4F0_9PLAN	5.690e-61	73.08	50S ribosomal protein L3 (Fragment) n=1 Tax=Planct...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 1..126 e-value: 8.7E-50 score: 167.3
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 2..130
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 26..104 e-value: 2.7E-14 score: 52.9
None	No IPR available	GENE3D	2.40.30.10		coord: 50..131 e-value: 3.6E-16 score: 61.0
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 23..46
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 2..130

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig101577	contig	M-pyrifera_M_contig101577:2..400 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig101577.325.1	mRNA_M-pyrifera_M_contig101577.325.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig101577 2..400 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig101577.325.1 ID=prot_M-pyrifera_M_contig101577.325.1|Name=mRNA_M-pyrifera_M_contig101577.325.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFS
GQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVV
RIDPESNMLLVYGGVPGPNGSFVQIRRTNKLG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019927	Ribosomal_L3_bac/org-type
IPR000597	Ribosomal_L3
IPR019926	Ribosomal_L3_CS
IPR009000	Transl_B-barrel_sf