prot_M-pyrifera_M_contig10145.304.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig10145.304.1
Unique Nameprot_M-pyrifera_M_contig10145.304.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length260
Homology
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BLAST of mRNA_M-pyrifera_M_contig10145.304.1 vs. uniprot
Match: D7FJ86_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ86_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 6.270e-123
Identity = 185/237 (78.06%), Postives = 211/237 (89.03%), Query Frame = 0 
Query:   10 LQSKEVRRIVRMTENASSEAYALFPPIRGIIDHVGIAAAKVTLVYRLEDKVDWPLMLLFTPMWVCVLLAGSLRCVTPPHPQVTGEQVAFYKAGAFFTGLFHLVARGAQPMLIVLKIEGQVDGSWASVFVPLWMFMGATALAGSALCCCAPMVSRGVIPEIRPLLIRGMLLCSVGTFSLAFCALLFLVFLTLDLDGSENVSPSTILAPLIALYALILVFLPLLLLVTRHYVRVRKDKQ 246
            ++SKE+R+I+R T +  SE YALFPP+ GIIDH+G+AAAKVTL YRLE KVDW L+LLFTPMW CVLLAG+LRC+TPPHPQV  E  + ++AGAFFTGLFHLVARGAQP+LIVLK++GQ++G W+SVF+PLWMFMGA AL GSALCCCAP VSRGVIPEIRPLLIRGMLLCSVGTFSLAFCALLFLVFLTL+LD +EN SP TILAPLIALYALILVFLPLLLLVTRHYVR  +  +
Sbjct:   98 IKSKELRKILRTTVHVPSETYALFPPLGGIIDHLGVAAAKVTLAYRLEGKVDWSLLLLFTPMWACVLLAGTLRCITPPHPQVIAEHASLHRAGAFFTGLFHLVARGAQPVLIVLKVDGQLEGPWSSVFIPLWMFMGAIALGGSALCCCAPTVSRGVIPEIRPLLIRGMLLCSVGTFSLAFCALLFLVFLTLELDNNENFSPRTILAPLIALYALILVFLPLLLLVTRHYVRTMRTAE 334
[Close]
BLAST of mRNA_M-pyrifera_M_contig10145.304.1 vs. uniprot
Match: A0A7S2USS3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USS3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.080e-34
Identity = 81/219 (36.99%), Postives = 122/219 (55.71%), Query Frame = 0 
Query:   31 ALFPPIRGIIDHVGIAAAKVTLVYRLEDK---VDWPLMLLFTPMWVCVLLAGSLRCVTPPHPQV---TGEQVAFYKAGAFFTGLFHLVARGAQPMLIVLKIEGQVDGSWASVFVPLWMFMGATALAGSALCCCAPMVSRGVIP--EIRPLLIRGMLLCSVGTFSLAFCALLFLVFLTLDLDGSENVSPST-ILAPLIALYALILVFLPLLLLVTRHYVR 240
            A+  P  G+++H  +A  K+ LV  LED+     +PL LLF P+W  V  +  +RC  P   Q    T +  A ++  A   G FH ++R  QP+LI  KI+  + G W SVF P W+ +         +   AP++SR  +   E+R LL+R M LCS+ TF++A    +FL  L   L+G  + +  T IL P+I LY+LI+VFLP+L+L ++ Y R
Sbjct:  103 AILIPAFGMLEHAAVAVTKILLVMFLEDQGGVSKYPLTLLFLPIWASVTSSSFIRCCLPSPAQRQNRTAQPAALHRCSALVAGTFHFLSRALQPLLITTKIDNFLSGDWWSVFTPAWILLCVMLCISVIVGNTAPLISRHQLEATEVRILLVRMMFLCSLVTFTVAIFGFMFLYNLCRKLEGGRDTASITQILIPVIILYSLIMVFLPMLILASQRYHR 321
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10145.304.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ86_ECTSI6.270e-12378.06RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2USS3_9STRA2.080e-3436.99Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019396Transmembrane Fragile-X-F-associated proteinPFAMPF10269Tmemb_185Acoord: 123..227
e-value: 1.0E-7
score: 31.9
IPR019396Transmembrane Fragile-X-F-associated proteinPANTHERPTHR13568FAM11A, B PROTEINcoord: 108..226
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 212..235
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..61
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 133..161
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 236..260
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 114..132
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 201..211
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..113
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 162..172
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..200
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 133..155
NoneNo IPR availableTMHMMTMhelixcoord: 96..113
NoneNo IPR availableTMHMMTMhelixcoord: 213..235
NoneNo IPR availableTMHMMTMhelixcoord: 176..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10145contigM-pyrifera_M_contig10145:3676..10635 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10145.304.1mRNA_M-pyrifera_M_contig10145.304.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig10145 3676..10635 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig10145.304.1 ID=prot_M-pyrifera_M_contig10145.304.1|Name=mRNA_M-pyrifera_M_contig10145.304.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=260bp
MVSPPCVSRLQSKEVRRIVRMTENASSEAYALFPPIRGIIDHVGIAAAKV
TLVYRLEDKVDWPLMLLFTPMWVCVLLAGSLRCVTPPHPQVTGEQVAFYK
AGAFFTGLFHLVARGAQPMLIVLKIEGQVDGSWASVFVPLWMFMGATALA
GSALCCCAPMVSRGVIPEIRPLLIRGMLLCSVGTFSLAFCALLFLVFLTL
DLDGSENVSPSTILAPLIALYALILVFLPLLLLVTRHYVRVRKDKQPGGG
RGGGGGGGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019396TM_Fragile-X-F-assoc