prot_M-pyrifera_M_contig101239.260.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig101239.260.1
Unique Nameprot_M-pyrifera_M_contig101239.260.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length70
Homology
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BLAST of mRNA_M-pyrifera_M_contig101239.260.1 vs. uniprot
Match: A0A5F9DDW4_RABIT (PKHD1 like 1 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9DDW4_RABIT)

HSP 1 Score: 53.1 bits (126), Expect = 2.000e-6
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 0 
Query:    1 IVFAYQVVIDSVYPQYWSAGGGDRVMIVGSGFLDDASREEVLVDGKECRIDSVHSNHTHLFCTSP 65
            +VF Y + I  ++P   S GGG  +M+ G+GF  +     VLV G EC +D + SN+T L C  P
Sbjct: 1957 VVFEYPLDIQDIHPHQGSFGGGQTLMMTGTGF--NPQNSIVLVCGSECAVDRLSSNYTTLLCKIP 2019
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BLAST of mRNA_M-pyrifera_M_contig101239.260.1 vs. uniprot
Match: G1TUG6_RABIT (PKHD1 like 1 n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1TUG6_RABIT)

HSP 1 Score: 53.1 bits (126), Expect = 2.000e-6
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 0 
Query:    1 IVFAYQVVIDSVYPQYWSAGGGDRVMIVGSGFLDDASREEVLVDGKECRIDSVHSNHTHLFCTSP 65
            +VF Y + I  ++P   S GGG  +M+ G+GF  +     VLV G EC +D + SN+T L C  P
Sbjct: 1968 VVFEYPLDIQDIHPHQGSFGGGQTLMMTGTGF--NPQNSIVLVCGSECAVDRLSSNYTTLLCKIP 2030
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101239.260.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5F9DDW4_RABIT2.000e-640.00PKHD1 like 1 n=1 Tax=Oryctolagus cuniculus TaxID=9... [more]
G1TUG6_RABIT2.000e-640.00PKHD1 like 1 n=2 Tax=Oryctolagus cuniculus TaxID=9... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002909IPT domainPFAMPF01833TIGcoord: 8..69
e-value: 4.9E-10
score: 39.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1..70
e-value: 7.9E-11
score: 43.7
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 8..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101239contigM-pyrifera_M_contig101239:339..548 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101239.260.1mRNA_M-pyrifera_M_contig101239.260.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig101239 339..548 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig101239.260.1 ID=prot_M-pyrifera_M_contig101239.260.1|Name=mRNA_M-pyrifera_M_contig101239.260.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
IVFAYQVVIDSVYPQYWSAGGGDRVMIVGSGFLDDASREEVLVDGKECRI
DSVHSNHTHLFCTSPSIPPS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002909IPT_dom
IPR013783Ig-like_fold
IPR014756Ig_E-set