prot_M-pyrifera_M_contig1000.6.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig1000.6.1
Unique Nameprot_M-pyrifera_M_contig1000.6.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length100
Homology
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.580e-52
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG-YLVSVDTYMNLLLTSTEEYVDGKFAGNLGDVLIRCNNVLYLRGAEGDDDTAKAEEG-GANGMDEEEDEG 99
            MATPVNPKPFLNELTGKPVMVKLKWGMEYKG +LVSVDTYMNLLLTSTEEYVDG+FAGNLGDVLIRCNNVLYLRG E D+  AKA+   GANGMDEEEDEG
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEGANGMDEEEDEG 101          
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 142 bits (357), Expect = 3.440e-42
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGYLVSVDTYMNLLLTSTEEYVDGKFAGNLGDVLIRCNNVLYLRGAEGDDDTAKAEE 86
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKGYLVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLYLRG   D+D  + +E
Sbjct:    1 MATVPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDEDAVEEDE 87          
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Match: A0A835M2E4_9MAGN (Sm protein F n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M2E4_9MAGN)

HSP 1 Score: 142 bits (357), Expect = 3.650e-42
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGYLVSVDTYMNLLLTSTEEYVDGKFAGNLGDVLIRCNNVLYLRGAEGDDDTAKAE 85
            + PVNPKPFLN LTGKPVMVKLKWGMEYKGYLVSVD+YMNL L +TEEY+DGKF GNLG++LIRCNNVLYLRG   D+D  +A+
Sbjct:    4 SVPVNPKPFLNTLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGKFTGNLGEILIRCNNVLYLRGVPEDEDITEAD 87          
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Match: C1EHA5_MICCC (Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=C1EHA5_MICCC)

HSP 1 Score: 139 bits (351), Expect = 2.740e-41
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 0
Query:    4 PVNPKPFLNELTGKPVMVKLKWGMEYKGYLVSVDTYMNLLLTSTEEYVDGKFAGNLGDVLIRCNNVLYLRGAE 76
            PVNPKPFLN+LTGKP++VKLKWGMEYKG+LVS D YMNL L STEEYVDGKFAGNLG+VLIRCNNVLYLRGAE
Sbjct:    6 PVNPKPFLNQLTGKPIIVKLKWGMEYKGFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRCNNVLYLRGAE 78          
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Match: A0A7S0SJP6_9CHLO (Sm protein F n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJP6_9CHLO)

HSP 1 Score: 140 bits (352), Expect = 2.850e-41
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGYLVSVDTYMNLLLTSTEEYVDGKFAGNLGDVLIRCNNVLYLRGAE 76
            + PVNPKPFLN+LTGKPV+VKLKWGMEYKGYLVS D YMNL L STEEY+DG+FAGNLG+VLIRCNNVLYLRGAE
Sbjct:    4 SVPVNPKPFLNQLTGKPVIVKLKWGMEYKGYLVSTDAYMNLQLASTEEYIDGQFAGNLGEVLIRCNNVLYLRGAE 78          
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Match: A9S411_PHYPA (Sm protein F n=5 Tax=Streptophytina TaxID=131221 RepID=A9S411_PHYPA)

HSP 1 Score: 139 bits (350), Expect = 4.020e-41
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGYLVSVDTYMNLLLTSTEEYVDGKFAGNLGDVLIRCNNVLYLRGAEGDDDTAK 83
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKGYLVSVD+YMNL L STEE+VDG F GNLG+VLIRCNNV+YLRG   D+D A+
Sbjct:    1 MATIPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEVLIRCNNVMYLRGVPEDEDAAE 84          
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Match: A0A0E0MHU1_ORYPU (Sm protein F n=4 Tax=Petrosaviidae TaxID=1437197 RepID=A0A0E0MHU1_ORYPU)

HSP 1 Score: 138 bits (348), Expect = 7.870e-41
Identity = 67/86 (77.91%), Postives = 75/86 (87.21%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGYLVSVDTYMNLLLTSTEEYVDGKFAGNLGDVLIRCNNVLYLRGAEGDDDTAKAE 85
            MAT PVNPKPFLN LTGKPV+VKLKWGMEYKGYLVSVD+YMNL L +TEEY+DG+F+GNLG++LIRCNNVLYLRG   D D   AE
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDADIEDAE 86          
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Match: A0A6I9QRJ1_ELAGV (Sm protein F n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6I9QRJ1_ELAGV)

HSP 1 Score: 139 bits (350), Expect = 8.030e-41
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGYLVSVDTYMNLLLTSTEEYVDGKFAGNLGDVLIRCNNVLYLRGAEGDDDTAKAE 85
            A PVNPKPFLN LTGKPV+VKLKWGMEYKGYLVSVD+YMNL L +TEEY+DG+F+GNLG++LIRCNNVLYLRG   D++   AE
Sbjct:   27 AVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDEEIEDAE 110          
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Match: A0A1U8A9J8_NELNU (Sm protein F n=8 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8A9J8_NELNU)

HSP 1 Score: 137 bits (346), Expect = 1.680e-40
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGYLVSVDTYMNLLLTSTEEYVDGKFAGNLGDVLIRCNNVLYLRGAEGDDDTAKAE 85
            MAT PVNPKPFLN LTGKPV+VKLKWGMEYKGYLVSVD YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG   D++   AE
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDAYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAE 86          
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Match: A0A804J679_MUSAM (Sm protein F n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 137 bits (345), Expect = 2.260e-40
Identity = 66/86 (76.74%), Postives = 75/86 (87.21%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGYLVSVDTYMNLLLTSTEEYVDGKFAGNLGDVLIRCNNVLYLRGAEGDDDTAKAE 85
            MAT PVNPKPFLN LTGKPV+VKLKWGMEYKGYLVSVD+YMNL L +TEEYVDG+F GNLG++LIRCNNVLYLRG   D++   A+
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 86          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1000.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI1.580e-5288.12Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A176VZF1_MARPO3.440e-4278.16Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
A0A835M2E4_9MAGN3.650e-4277.38Sm protein F n=1 Tax=Coptis chinensis TaxID=261450... [more]
C1EHA5_MICCC2.740e-4187.67Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=... [more]
A0A7S0SJP6_9CHLO2.850e-4185.33Sm protein F n=1 Tax=Mantoniella antarctica TaxID=... [more]
A9S411_PHYPA4.020e-4179.76Sm protein F n=5 Tax=Streptophytina TaxID=131221 R... [more]
A0A0E0MHU1_ORYPU7.870e-4177.91Sm protein F n=4 Tax=Petrosaviidae TaxID=1437197 R... [more]
A0A6I9QRJ1_ELAGV8.030e-4176.19Sm protein F n=3 Tax=Mesangiospermae TaxID=1437183... [more]
A0A1U8A9J8_NELNU1.680e-4076.74Sm protein F n=8 Tax=Mesangiospermae TaxID=1437183... [more]
A0A804J679_MUSAM2.260e-4076.74Sm protein F n=10 Tax=Mesangiospermae TaxID=143718... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..74
e-value: 6.2E-23
score: 92.2
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..72
e-value: 1.8E-20
score: 72.3
IPR016487Sm-like protein Lsm6/SmFPIRSFPIRSF006609snRNP_SmFcoord: 1..83
e-value: 1.6E-36
score: 122.1
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..80
NoneNo IPR availableGENE3D2.30.30.100coord: 1..86
e-value: 9.2E-31
score: 107.2
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN POLYPEPTIDE Fcoord: 1..80
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1000contigM-pyrifera_M_contig1000:7233..12942 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1000.6.1mRNA_M-pyrifera_M_contig1000.6.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig1000 7233..13131 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig1000.6.1 ID=prot_M-pyrifera_M_contig1000.6.1|Name=mRNA_M-pyrifera_M_contig1000.6.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MATPVNPKPFLNELTGKPVMVKLKWGMEYKGYLVSVDTYMNLLLTSTEEY
VDGKFAGNLGDVLIRCNNVLYLRGAEGDDDTAKAEEGGANGMDEEEDEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf