mRNA_M-pyrifera_M_contig99981.22991.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99981.22991.1
Unique NamemRNA_M-pyrifera_M_contig99981.22991.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Match: A0A2E7KKH5_9PLAN (Cation transporter n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKH5_9PLAN)

HSP 1 Score: 187 bits (474), Expect = 5.850e-57
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1
Query:    1 GTPADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH 288
            GTPADFDIPALVERVEALA+IEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH
Sbjct:  228 GTPADFDIPALVERVEALADIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH 323          
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Match: A0A518AD92_9PLAN (Cadmium, cobalt and zinc/H(+)-K(+) antiporter n=5 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AD92_9PLAN)

HSP 1 Score: 139 bits (351), Expect = 1.680e-38
Identity = 67/96 (69.79%), Postives = 82/96 (85.42%), Query Frame = 1
Query:    1 GTPADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH 288
            GTPAD D+ AL+ER+EA  ++ EIHHLHLWELDEEH ALEAHVVIRK++A+++E+IK QIKELL+ EF+I+H+TLEFEF    EN CHDTRVI EH
Sbjct:  228 GTPADIDVSALIERIEATGDVIEIHHLHLWELDEEHRALEAHVVIRKEDADKLEVIKHQIKELLLDEFEIQHTTLEFEFDGDQENHCHDTRVIAEH 323          
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Match: A0A2E2C1F6_9PLAN (Cation transporter n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C1F6_9PLAN)

HSP 1 Score: 135 bits (339), Expect = 1.030e-36
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 1
Query:    1 GTPADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH 288
            GTPAD D+ AL+ER+E   ++ EIHHLHLWELDEEH ALE HVVIRK+NAEQME+IKQQIK+L+  EF+I+H+TLEFEF    + QCHDT+VI EH
Sbjct:  228 GTPADIDVSALMERIEENEDVVEIHHLHLWELDEEHRALETHVVIRKENAEQMEVIKQQIKKLVADEFKIKHTTLEFEFDGDEKKQCHDTQVIAEH 323          
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Match: A0A5M6D371_9BACT (Cation transporter n=2 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6D371_9BACT)

HSP 1 Score: 103 bits (258), Expect = 9.720e-25
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 GTPADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFAD 243
            G P DFD  A+V  V+A+  +E  HH HLWELDE+ TALEAHVVI K NA  +E IKQ +KELL HEF IEHSTLEFEF+D
Sbjct:  234 GAPHDFDFDAMVSAVQAVPAVEGAHHFHLWELDEQRTALEAHVVIAKSNARDLEAIKQTLKELLQHEFGIEHSTLEFEFSD 314          
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Match: A0A5C5XPH1_9PLAN (Cadmium, cobalt and zinc/H(+)-K(+) antiporter n=1 Tax=Rubinisphaera italica TaxID=2527969 RepID=A0A5C5XPH1_9PLAN)

HSP 1 Score: 99.0 bits (245), Expect = 7.340e-23
Identity = 49/96 (51.04%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 GTPADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH 288
            GTP D D+  LV+++E +  +   HH+H+WELDE+H ALEAHV+I+K N + +E IK++IK  L  EFQI+HSTLEFE+    E+ C D +VI +H
Sbjct:  227 GTPVDLDMKELVKKIEQIDGVSGTHHVHVWELDEQHRALEAHVIIQKGNPDVLESIKRKIKHSLSDEFQIQHSTLEFEYEGVGED-CDDQQVIADH 321          
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Match: A0A2A2W3Y8_9BACT (Cation transporter n=1 Tax=Rhodopirellula sp. SM50 TaxID=595453 RepID=A0A2A2W3Y8_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 1.190e-21
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 GTPADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH 288
            G P D  +  L+E VE ++ +EE+HHLH+WELDE   ALEAHVVI +Q+A ++E IK +IK LL   F+I HSTLEFE +D+  + C+D  VI  H
Sbjct:  233 GAPPDVKLKELIESVEQISGVEELHHLHVWELDERTRALEAHVVIAEQSAVKLESIKCEIKSLLGTRFKIGHSTLEFELSDSNGSNCNDDGVISAH 328          
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Match: A0A2E2BY45_9PLAN (Cation transporter n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BY45_9PLAN)

HSP 1 Score: 94.0 bits (232), Expect = 5.390e-21
Identity = 43/96 (44.79%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 GTPADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH 288
            G P DFDI +++ +++ +  +++IHH+H+WELDE+H +LEAH++I++  A ++E IK +IK  L+H+F+I HSTLEFE  D+  +   DT  I +H
Sbjct:  223 GAPVDFDIDSMIGQLKQINGVDDIHHVHIWELDEQHRSLEAHILIQRARAVELEAIKTRIKNTLIHDFRIAHSTLEFELFDSGAHS-QDTTTIIDH 317          
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Match: A0A517TE30_9PLAN (Cadmium, cobalt and zinc/H(+)-K(+) antiporter n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517TE30_9PLAN)

HSP 1 Score: 92.8 bits (229), Expect = 1.590e-20
Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 GTPADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH 288
            GTP D D+  L+  VE +  +  IHH+H+WELDE+H ALEAHVV+   +   +E IK  IK  L  +F+I+HSTLEFE+ D     C D++VI +H
Sbjct:  228 GTPPDIDLDNLINSVEQIEQVGSIHHVHVWELDEQHRALEAHVVVMTDSMSTIENIKTTIKRRLSDDFEIQHSTLEFEYVDNENVLCTDSKVIVDH 323          
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Match: A0A849MIN1_9PROT (Cation transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A849MIN1_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 1.890e-20
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1
Query:    7 PADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQ-CHDTRVIPEH 288
            PAD DI  + +R+E + NI+E+HHLH+WEL+E   +LEAHVVI +   +  EIIK QIK++L   F I HST+EFE+   +EN  C D  +I  H
Sbjct:  217 PADIDINEVTKRLEEIENIKEVHHLHVWELNEHERSLEAHVVITESGHQDAEIIKGQIKDILYESFHISHSTIEFEYESQSENNNCCDNSIITPH 311          
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Match: A0A2D9JGR3_9BACT (Cation transporter n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D9JGR3_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 2.720e-20
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 1
Query:    7 PADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNAEQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH 288
            P D    AL++ +E++  +EEIHH+H+WEL+E   ++EAHVVIR+ + ++ME IK ++K LL   F+I HSTLE E    A +  HD+ V+P+H
Sbjct:  138 PPDIXFDALIQAMESVDGVEEIHHVHVWELNERDRSVEAHVVIRESDMDRMEAIKSKLKHLLGERFRIAHSTLEIELPPTASDHRHDSAVVPQH 231          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99981.22991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KKH5_9PLAN5.850e-5798.96Cation transporter n=5 Tax=Gimesia TaxID=1649453 R... [more]
A0A518AD92_9PLAN1.680e-3869.79Cadmium, cobalt and zinc/H(+)-K(+) antiporter n=5 ... [more]
A0A2E2C1F6_9PLAN1.030e-3668.75Cation transporter n=4 Tax=Planctomycetaceae TaxID... [more]
A0A5M6D371_9BACT9.720e-2565.43Cation transporter n=2 Tax=Roseiconus nitratireduc... [more]
A0A5C5XPH1_9PLAN7.340e-2351.04Cadmium, cobalt and zinc/H(+)-K(+) antiporter n=1 ... [more]
A0A2A2W3Y8_9BACT1.190e-2152.08Cation transporter n=1 Tax=Rhodopirellula sp. SM50... [more]
A0A2E2BY45_9PLAN5.390e-2144.79Cation transporter n=2 Tax=Planctomycetaceae TaxID... [more]
A0A517TE30_9PLAN1.590e-2047.92Cadmium, cobalt and zinc/H(+)-K(+) antiporter n=1 ... [more]
A0A849MIN1_9PROT1.890e-2049.47Cation transporter n=1 Tax=Proteobacteria bacteriu... [more]
A0A2D9JGR3_9BACT2.720e-2045.74Cation transporter n=1 Tax=Rhodopirellula sp. TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99981contigM-pyrifera_M_contig99981:392..682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.8
Seed ortholog evalue9.7e-14
Seed eggNOG ortholog243090.RB8834
Preferred nameczcD
KEGG koko:K16264
KEGG TC2.A.4.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cation efflux family
EggNOG OGs2J098@203682,COG1230@1,COG1230@2
COG Functional cat.P
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.1931334-CDS-M-pyrifera_M_contig99981:391..6821622816917.1931334-CDS-M-pyrifera_M_contig99981:391..682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99981 392..682 -
1692278254.1417184-CDS-M-pyrifera_M_contig99981:391..6821692278254.1417184-CDS-M-pyrifera_M_contig99981:391..682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99981 392..682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99981.22991.1prot_M-pyrifera_M_contig99981.22991.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99981 392..682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99981.22991.1

>prot_M-pyrifera_M_contig99981.22991.1 ID=prot_M-pyrifera_M_contig99981.22991.1|Name=mRNA_M-pyrifera_M_contig99981.22991.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
GTPADFDIPALVERVEALANIEEIHHLHLWELDEEHTALEAHVVIRKQNA
EQMEIIKQQIKELLVHEFQIEHSTLEFEFADAAENQCHDTRVIPEH*
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mRNA from alignment at M-pyrifera_M_contig99981:392..682-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99981.22991.1 ID=mRNA_M-pyrifera_M_contig99981.22991.1|Name=mRNA_M-pyrifera_M_contig99981.22991.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig99981:392..682- (Macrocystis pyrifera P11B4 male)
GGAACCCCCGCTGACTTCGATATTCCGGCCCTGGTCGAACGCGTCGAAGC GCTTGCCAACATTGAAGAGATCCACCATCTGCACCTGTGGGAACTGGATG AAGAGCACACAGCGCTGGAGGCACACGTGGTCATCCGGAAACAGAATGCA GAGCAGATGGAGATCATCAAGCAGCAGATCAAGGAATTACTGGTACACGA ATTTCAGATTGAACACTCAACACTGGAATTCGAATTCGCTGACGCAGCAG AAAACCAGTGCCACGATACGCGGGTGATTCCCGAGCATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99981:392..682-

>mRNA_M-pyrifera_M_contig99981.22991.1 ID=mRNA_M-pyrifera_M_contig99981.22991.1|Name=mRNA_M-pyrifera_M_contig99981.22991.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig99981:392..682- (Macrocystis pyrifera P11B4 male)
GGAACCCCCGCTGACTTCGATATTCCGGCCCTGGTCGAACGCGTCGAAGC
GCTTGCCAACATTGAAGAGATCCACCATCTGCACCTGTGGGAACTGGATG
AAGAGCACACAGCGCTGGAGGCACACGTGGTCATCCGGAAACAGAATGCA
GAGCAGATGGAGATCATCAAGCAGCAGATCAAGGAATTACTGGTACACGA
ATTTCAGATTGAACACTCAACACTGGAATTCGAATTCGCTGACGCAGCAG
AAAACCAGTGCCACGATACGCGGGTGATTCCCGAGCATTGAGGAACCCCC
GCTGACTTCGATATTCCGGCCCTGGTCGAACGCGTCGAAGCGCTTGCCAA
CATTGAAGAGATCCACCATCTGCACCTGTGGGAACTGGATGAAGAGCACA
CAGCGCTGGAGGCACACGTGGTCATCCGGAAACAGAATGCAGAGCAGATG
GAGATCATCAAGCAGCAGATCAAGGAATTACTGGTACACGAATTTCAGAT
TGAACACTCAACACTGGAATTCGAATTCGCTGACGCAGCAGAAAACCAGT
GCCACGATACGCGGGTGATTCCCGAGCATTGA
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