mRNA_M-pyrifera_M_contig99901.22978.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99901.22978.1
Unique NamemRNA_M-pyrifera_M_contig99901.22978.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99901.22978.1 vs. uniprot
Match: A0A3D4TXV9_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A3D4TXV9_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 3.070e-18
Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 1 
Query:    7 PLQDERYYLQIELEDQFSKGSLLEVGNSIFDSTPQLFLDPTDPSIYLHTDLELAGLQL-NDFGVGLSATKQLEFVPYEYSEDLN-AIMTRPLERLYGNLALYGTLPFPKYPDLKFKGEMVVGFVVNEDGTADFFSSGFEGNELSLGAQGQVWFDNKMVDFLPNDVEIELGRATVILVLVEGGENYVQV--AGQADGKQIIENIL 606
            PL D  YY    ++    +G   +       +    FLD ++P+++   D++  G  L  + G+G+S+   + F P  YS  L  A+         G+L   G +P  KYP LK  G  V+    +  G  DFF  GF+ +   LGA G + FDN ++ FLP ++++ LG+AT+     E  +N+  +  AG+      +  IL
Sbjct:  164 PLTDTTYYFHYIIDQSVDRGGKAQKIKKTTFTFKDFFLDASEPAVFFLGDIQSNGRYLVKNLGIGISSAGTIPFQPLTYSNTLEEAVGGTGFTPFNGHLFFGGDIPIKKYP-LKIVGSAVINTAYSSAGVTDFFERGFDNSSFQLGANGYLTFDNALIKFLPLNLDVTLGKATL---QAEYTDNHAMIRFAGEYSNIDYLREIL 363
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BLAST of mRNA_M-pyrifera_M_contig99901.22978.1 vs. uniprot
Match: A0A1G1B8Z4_9BACT (Uncharacterized protein n=4 Tax=Ignavibacteria TaxID=795747 RepID=A0A1G1B8Z4_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 1.270e-11
Identity = 56/191 (29.32%), Postives = 94/191 (49.21%), Query Frame = 1 
Query:    7 PLQDERYYLQIELEDQFSKGSLLEVGNSIFDSTPQLFLDPTDPSIYLHTDLELAGL-QLNDFGVGLSATKQLEFVPYEYSEDLNAIMTRPLERLYGNLALYGTLPFPKYPDLKFKGEMVVGFVVNEDGTADFFSSGFEGNELS--LGAQGQVWFDNKMVDFLPNDVEIELGRATVILVLVEGGENYVQVAG 570
            P+  +RYY   E ++         + +S   +  ++ +DP DP  +   D     L  ++D G+ +S    + FVP        A+    ++  +GNL L GT+P  +YP + F GE  + F   E  +  FF+    GNE +  LG  G+   D+  +D+L  +VE+ LG+AT+IL + E G   ++ AG
Sbjct:  164 PVNADRYYFYYENDNPIQAN----ITSSSIKNIKKIAIDPKDPFTFFTCDFNGTKLGDISDVGIAISTRGLIPFVP--------AVSFGGIKGFFGNLYLTGTIPLRQYP-VAFTGEACMSFGSGEGNSDKFFA----GNESTFMLGLNGKATLDHDALDWL--NVEVVLGKATLILDVKESGSTELKFAG 335
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99901.22978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D4TXV9_9BACT3.070e-1828.92Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
A0A1G1B8Z4_9BACT1.270e-1129.32Uncharacterized protein n=4 Tax=Ignavibacteria Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99901contigM-pyrifera_M_contig99901:46..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.598248-CDS-M-pyrifera_M_contig99901:45..6511622816916.598248-CDS-M-pyrifera_M_contig99901:45..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99901 46..651 -
1692278253.8058097-CDS-M-pyrifera_M_contig99901:45..6511692278253.8058097-CDS-M-pyrifera_M_contig99901:45..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99901 46..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99901.22978.1prot_M-pyrifera_M_contig99901.22978.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99901 46..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99901.22978.1

>prot_M-pyrifera_M_contig99901.22978.1 ID=prot_M-pyrifera_M_contig99901.22978.1|Name=mRNA_M-pyrifera_M_contig99901.22978.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
EAPLQDERYYLQIELEDQFSKGSLLEVGNSIFDSTPQLFLDPTDPSIYLH
TDLELAGLQLNDFGVGLSATKQLEFVPYEYSEDLNAIMTRPLERLYGNLA
LYGTLPFPKYPDLKFKGEMVVGFVVNEDGTADFFSSGFEGNELSLGAQGQ
VWFDNKMVDFLPNDVEIELGRATVILVLVEGGENYVQVAGQADGKQIIEN
IL
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mRNA from alignment at M-pyrifera_M_contig99901:46..651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99901.22978.1 ID=mRNA_M-pyrifera_M_contig99901.22978.1|Name=mRNA_M-pyrifera_M_contig99901.22978.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig99901:46..651- (Macrocystis pyrifera P11B4 male)
GAAGCTCCCTTGCAGGACGAGCGATATTATCTTCAGATAGAACTTGAAGA
CCAATTTTCTAAAGGGTCGTTGTTGGAAGTGGGAAACTCAATTTTTGATT
CTACCCCCCAATTATTTTTAGACCCAACCGATCCCTCCATATACTTGCAT
ACAGATCTTGAATTGGCCGGATTGCAACTTAATGACTTCGGAGTTGGCCT
ATCTGCAACTAAACAATTGGAGTTTGTTCCATACGAATACAGTGAGGATC
TTAATGCTATCATGACAAGACCTTTAGAACGTCTTTATGGCAATCTTGCT
TTGTATGGAACACTTCCTTTTCCTAAATATCCTGATCTTAAATTTAAAGG
AGAAATGGTAGTTGGGTTCGTGGTAAACGAAGACGGAACGGCAGATTTTT
TTAGTAGCGGATTTGAAGGAAATGAACTCAGTCTGGGAGCTCAAGGCCAG
GTTTGGTTCGACAATAAAATGGTAGATTTTTTGCCTAATGACGTGGAAAT
TGAATTGGGTCGGGCTACCGTTATTCTTGTGTTGGTTGAAGGAGGGGAAA
ACTACGTTCAAGTAGCTGGCCAGGCAGATGGGAAACAAATCATTGAGAAC
ATTTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99901:46..651-

>mRNA_M-pyrifera_M_contig99901.22978.1 ID=mRNA_M-pyrifera_M_contig99901.22978.1|Name=mRNA_M-pyrifera_M_contig99901.22978.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig99901:46..651- (Macrocystis pyrifera P11B4 male)
GAAGCTCCCTTGCAGGACGAGCGATATTATCTTCAGATAGAACTTGAAGA
CCAATTTTCTAAAGGGTCGTTGTTGGAAGTGGGAAACTCAATTTTTGATT
CTACCCCCCAATTATTTTTAGACCCAACCGATCCCTCCATATACTTGCAT
ACAGATCTTGAATTGGCCGGATTGCAACTTAATGACTTCGGAGTTGGCCT
ATCTGCAACTAAACAATTGGAGTTTGTTCCATACGAATACAGTGAGGATC
TTAATGCTATCATGACAAGACCTTTAGAACGTCTTTATGGCAATCTTGCT
TTGTATGGAACACTTCCTTTTCCTAAATATCCTGATCTTAAATTTAAAGG
AGAAATGGTAGTTGGGTTCGTGGTAAACGAAGACGGAACGGCAGATTTTT
TTAGTAGCGGATTTGAAGGAAATGAACTCAGTCTGGGAGCTCAAGGCCAG
GTTTGGTTCGACAATAAAATGGTAGATTTTTTGCCTAATGACGTGGAAAT
TGAATTGGGTCGGGCTACCGTTATTCTTGTGTTGGTTGAAGGAGGGGAAA
ACTACGTTCAAGTAGCTGGCCAGGCAGATGGGAAACAAATCATTGAGAAC
ATTTTGGAAGCTCCCTTGCAGGACGAGCGATATTATCTTCAGATAGAACT
TGAAGACCAATTTTCTAAAGGGTCGTTGTTGGAAGTGGGAAACTCAATTT
TTGATTCTACCCCCCAATTATTTTTAGACCCAACCGATCCCTCCATATAC
TTGCATACAGATCTTGAATTGGCCGGATTGCAACTTAATGACTTCGGAGT
TGGCCTATCTGCAACTAAACAATTGGAGTTTGTTCCATACGAATACAGTG
AGGATCTTAATGCTATCATGACAAGACCTTTAGAACGTCTTTATGGCAAT
CTTGCTTTGTATGGAACACTTCCTTTTCCTAAATATCCTGATCTTAAATT
TAAAGGAGAAATGGTAGTTGGGTTCGTGGTAAACGAAGACGGAACGGCAG
ATTTTTTTAGTAGCGGATTTGAAGGAAATGAACTCAGTCTGGGAGCTCAA
GGCCAGGTTTGGTTCGACAATAAAATGGTAGATTTTTTGCCTAATGACGT
GGAAATTGAATTGGGTCGGGCTACCGTTATTCTTGTGTTGGTTGAAGGAG
GGGAAAACTACGTTCAAGTAGCTGGCCAGGCAGATGGGAAACAAATCATT
GAGAACATTTTG
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