mRNA_M-pyrifera_M_contig99895.22975.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99895.22975.1
Unique NamemRNA_M-pyrifera_M_contig99895.22975.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Match: A0A5A8CVQ1_CAFRO (Hydrolase_4 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CVQ1_CAFRO)

HSP 1 Score: 110 bits (274), Expect = 3.770e-26
Identity = 54/119 (45.38%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    1 GGAAWVDARRIRACRSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGRIGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAWCSGWTPWKGASWGEKAAIDFIAAV 357
            G    +D  R+R  R +R+FD +VV P FGYD    YY DA++   LA R+ VP L ++A DDPI D  GVP +A A NP +FL +T EGGHVAW +G    +G  W     + F  AV
Sbjct:  236 GNPKGIDFDRVRRSRLVREFDGAVVAPMFGYDSAWDYYHDATTAPFLATRVAVPLLTLSAADDPICDVRGVPTEAAAKNPRLFLGVTSEGGHVAWSTGMDA-QGKYWYPDVCLRFFDAV 353          
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Match: A0A7S2SB44_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SB44_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.500e-22
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   16 VDARRIRACRSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGRIGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAWCSGWTPWKGASWGEKAAIDFIAAVWA 363
            V   R+  CR +RDFDA VVVP  GY+ VDHYY ++S+  +    I +P+LA+NA+DDPI     VP D+ + N N+   +T  GGHV   SG  P K  SW +  +I+F+++  A
Sbjct:  157 VSPDRVLQCRDVRDFDAEVVVPLHGYESVDHYYTESST-KDRVQHIAIPYLAVNAEDDPICSVASVPRDSCSLNGNLAFLITPAGGHVGHASGIFP-KTLSWLDSVSIEFLSSALA 270          
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Match: A0A0H5R801_9EUKA (Hydrolase_4 domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R801_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 5.100e-21
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   16 VDARRIRACRSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGRIGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAWCSGWTPWKGASWGEKAAIDFIAAV 357
            +D +R+    ++R FD+S VVP  G+ D+ HYY + S+   L   + VP L INA DDPI  AHGVP+DA   N N+FL +   GGHVA+   W      SW E A+++FI A+
Sbjct:  269 LDLQRVYKSVTVRQFDSSFVVPLHGFRDIKHYYDECSTDTRLH-LVQVPLLCINAADDPICPAHGVPVDAFNENENLFLTVVPTGGHVAFMHDWFDLS-HSWMESASLEFIEAI 380          
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Match: A0A388L1L4_CHABU (AB hydrolase-1 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L1L4_CHABU)

HSP 1 Score: 94.4 bits (233), Expect = 5.180e-20
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   19 DARRIRACRSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGRIGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAWCSGWTPWKGASWGEKAAIDFIAAV 357
            D  + RA R++R+FD  +    FGY  V+ YY DASS   +   + +P L + A+DDPI  A G+P  A + NPN  L +T  GGH+ WCSG     GA W +   I+++ AV
Sbjct:  652 DLVKARAARTVREFDEGLTRVSFGYRTVEDYYFDASSCRSVP-YVRIPLLCVQAQDDPIAPARGIPRKALSANPNCILVVTPGGGHLGWCSGKDSLLGAPWSDPLVIEYLRAV 763          
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Match: A0A0D2UP69_CAPO3 (Hydrolase_4 domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UP69_CAPO3)

HSP 1 Score: 92.4 bits (228), Expect = 1.180e-19
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   13 WVDARRIRACRSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGRIGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAWCSGWTPWKGASWGEKAAIDFIAAVWAQE 369
            W     +  CR++RDFD +VVVP FG+  +  YY  ASS   L  ++ +P L INA DDP +   G+P  A   NPN  L LT  GGH+ +     P  G+S+ E A  +F+  + A +
Sbjct:  268 WFTIEDVEKCRTIRDFDQTVVVPMFGFASLQEYYSQASSVNHLP-KVQIPLLCINAADDPFSPVQGIPFAAFEANPNALLCLTPTGGHIGFSESHLPPFGSSFVESALGEFLHCMLAHQ 385          
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Match: A0A7S3D6Z8_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D6Z8_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 4.360e-19
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   16 VDARRIRACRSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGRIGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAW 285
            +D + ++  +++RDFD  VVV  +GY+DV+HYY DA+    +   +  P L   A+DDPIT   G+P DA   NPN+FLA T++GGHV+W
Sbjct:  493 IDMKELKKVQTVRDFDEHVVVKMYGYEDVNHYYADATFKHRMKD-VACPTLVCIARDDPITSPSGIPYDAFETNPNLFLATTRKGGHVSW 581          
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Match: A0A816TPD8_9BILA (Hypothetical protein n=3 Tax=Rotaria TaxID=231623 RepID=A0A816TPD8_9BILA)

HSP 1 Score: 90.5 bits (223), Expect = 6.730e-19
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   16 VDARRIRACRSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGRIGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAWCSGWTPWKGASWGEKAAIDFIAA 354
            ++  ++   +++RDFD  V+VPQ+GY DVDHYY +ASS   L   I +P L ++A DDPI    G+P+D    NP +    T EGGHV++  GW P K  S+     +D+  A
Sbjct:  270 LNVNQVYQSKTIRDFDTHVIVPQYGYRDVDHYYSEASSNIWLK-YIQIPTLILSAIDDPICPIDGLPVDDVLQNPYLIAIKTLEGGHVSYLQGWWPRK-FSYDNIVVVDYFKA 380          
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Match: A0A814X180_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A814X180_9BILA)

HSP 1 Score: 90.1 bits (222), Expect = 9.230e-19
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   43 RSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGRIGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAWCSGWTPWKGASWGEKAAIDFIAA 354
            +++RDFD  +VVPQ+G+ DV+HYY +ASS   L   I +P L ++A DDPI    G+P+D    NP +    T EGGHV++  GW P +  S+     ID+I A
Sbjct:  279 KTIRDFDKHIVVPQYGFRDVEHYYSEASSNVWLKS-IRIPTLILSAIDDPICPIEGLPIDDVLQNPYLIAIKTLEGGHVSYLQGWWP-RTYSYDNTVVIDYIKA 380          
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Match: A0A397TBR9_9GLOM (Alpha/Beta hydrolase protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TBR9_9GLOM)

HSP 1 Score: 89.7 bits (221), Expect = 1.080e-18
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   16 VDARRIRACRSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGRIGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAWCSGW 297
            +D    ++  +LR+FD+ +    FGY+ VDHYYRDASS   +  ++ +P L +NA+DDP+     +P D    NPNI LA T  GGH+ W +GW
Sbjct:  267 LDLEYAKSAITLREFDSRLTTISFGYETVDHYYRDASSSPYIT-KVKIPLLCLNAEDDPVASQECIPYDECIYNPNIILATTYYGGHLGWFTGW 359          
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Match: A0A059LDA0_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LDA0_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 1.150e-18
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   43 RSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGRIGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAWCSGWTPWKGASWGEKAAIDFIAAVWAQ 366
            R++R+FD ++  P FG+   + YY ++ S A +   + +PFL I A+DDPI     VP  A   NPN  L  T  GGH+ WCSG    +GA W +   ++++ A+  Q
Sbjct:   63 RTVREFDEALTAPSFGWKSAEEYYANSGSAAAVP-HVRIPFLCIQARDDPIAVLAAVPRKAFLENPNCLLVETPTGGHLGWCSGMQGTRGAPWCDAVVVEWLQALLRQ 169          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99895.22975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CVQ1_CAFRO3.770e-2645.38Hydrolase_4 domain-containing protein n=2 Tax=Cafe... [more]
A0A7S2SB44_9STRA2.500e-2243.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0H5R801_9EUKA5.100e-2143.86Hydrolase_4 domain-containing protein n=1 Tax=Spon... [more]
A0A388L1L4_CHABU5.180e-2040.71AB hydrolase-1 domain-containing protein n=1 Tax=C... [more]
A0A0D2UP69_CAPO31.180e-1938.66Hydrolase_4 domain-containing protein n=1 Tax=Caps... [more]
A0A7S3D6Z8_9EUKA4.360e-1945.56Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A816TPD8_9BILA6.730e-1940.71Hypothetical protein n=3 Tax=Rotaria TaxID=231623 ... [more]
A0A814X180_9BILA9.230e-1943.27Hypothetical protein n=4 Tax=Rotaria sordida TaxID... [more]
A0A397TBR9_9GLOM1.080e-1842.55Alpha/Beta hydrolase protein n=1 Tax=Glomus cerebr... [more]
A0A059LDA0_9CHLO1.150e-1837.04Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99895contigM-pyrifera_M_contig99895:303..674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog529818.AMSG_09351T0
KEGG koko:K13696
Hectar predicted targeting categoryother localisation
EggNOG free text desc.poly(3-hydroxybutyrate) depolymerase activity
EggNOG OGsCOG0429@1,KOG1838@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.3299892-CDS-M-pyrifera_M_contig99895:302..6741622816916.3299892-CDS-M-pyrifera_M_contig99895:302..674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99895 303..674 -
1692278253.6142287-CDS-M-pyrifera_M_contig99895:302..6741692278253.6142287-CDS-M-pyrifera_M_contig99895:302..674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99895 303..674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99895.22975.1prot_M-pyrifera_M_contig99895.22975.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99895 303..674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99895.22975.1

>prot_M-pyrifera_M_contig99895.22975.1 ID=prot_M-pyrifera_M_contig99895.22975.1|Name=mRNA_M-pyrifera_M_contig99895.22975.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
GGAAWVDARRIRACRSLRDFDASVVVPQFGYDDVDHYYRDASSGAELAGR
IGVPFLAINAKDDPITDAHGVPLDAPAPNPNIFLALTQEGGHVAWCSGWT
PWKGASWGEKAAIDFIAAVWAQE*
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mRNA from alignment at M-pyrifera_M_contig99895:303..674-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99895.22975.1 ID=mRNA_M-pyrifera_M_contig99895.22975.1|Name=mRNA_M-pyrifera_M_contig99895.22975.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig99895:303..674- (Macrocystis pyrifera P11B4 male)
GGCGGGGCGGCGTGGGTGGATGCGCGCCGGATCCGCGCATGCCGGTCCTT GCGAGACTTCGATGCCTCTGTAGTGGTGCCCCAGTTCGGATATGACGATG TGGACCACTATTACCGCGACGCTTCGTCGGGCGCAGAGCTTGCAGGCCGA ATTGGGGTGCCGTTCCTCGCCATCAACGCCAAGGACGACCCCATCACCGA CGCACACGGCGTCCCACTCGACGCACCCGCCCCAAACCCAAACATCTTCC TCGCACTCACCCAGGAAGGCGGCCATGTCGCCTGGTGCTCCGGCTGGACC CCCTGGAAAGGCGCATCCTGGGGAGAAAAAGCAGCCATCGACTTCATTGC AGCCGTGTGGGCACAGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99895:303..674-

>mRNA_M-pyrifera_M_contig99895.22975.1 ID=mRNA_M-pyrifera_M_contig99895.22975.1|Name=mRNA_M-pyrifera_M_contig99895.22975.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig99895:303..674- (Macrocystis pyrifera P11B4 male)
GGCGGGGCGGCGTGGGTGGATGCGCGCCGGATCCGCGCATGCCGGTCCTT
GCGAGACTTCGATGCCTCTGTAGTGGTGCCCCAGTTCGGATATGACGATG
TGGACCACTATTACCGCGACGCTTCGTCGGGCGCAGAGCTTGCAGGCCGA
ATTGGGGTGCCGTTCCTCGCCATCAACGCCAAGGACGACCCCATCACCGA
CGCACACGGCGTCCCACTCGACGCACCCGCCCCAAACCCAAACATCTTCC
TCGCACTCACCCAGGAAGGCGGCCATGTCGCCTGGTGCTCCGGCTGGACC
CCCTGGAAAGGCGCATCCTGGGGAGAAAAAGCAGCCATCGACTTCATTGC
AGCCGTGTGGGCACAGGAATAGGGCGGGGCGGCGTGGGTGGATGCGCGCC
GGATCCGCGCATGCCGGTCCTTGCGAGACTTCGATGCCTCTGTAGTGGTG
CCCCAGTTCGGATATGACGATGTGGACCACTATTACCGCGACGCTTCGTC
GGGCGCAGAGCTTGCAGGCCGAATTGGGGTGCCGTTCCTCGCCATCAACG
CCAAGGACGACCCCATCACCGACGCACACGGCGTCCCACTCGACGCACCC
GCCCCAAACCCAAACATCTTCCTCGCACTCACCCAGGAAGGCGGCCATGT
CGCCTGGTGCTCCGGCTGGACCCCCTGGAAAGGCGCATCCTGGGGAGAAA
AAGCAGCCATCGACTTCATTGCAGCCGTGTGGGCACAGGAATAG
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