mRNA_M-pyrifera_M_contig9987.22965.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9987.22965.1
Unique NamemRNA_M-pyrifera_M_contig9987.22965.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9987.22965.1 vs. uniprot
Match: D8LR83_ECTSI (PEROXIDASE_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR83_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.630e-14
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    4 SVAAS--IGLALSVGPDATTATVNFETERYGDKELKIATVNKLRQQIRNSV 150
            SVAAS  +GLAL+V P+A  A+VNFETERYGDKELKIATVNKLRQQIRNS+
Sbjct:   70 SVAASFGLGLALAVSPEAAQASVNFETERYGDKELKIATVNKLRQQIRNSL 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig9987.22965.1 vs. uniprot
Match: K8ZA26_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZA26_NANGC)

HSP 1 Score: 50.1 bits (118), Expect = 1.710e-6
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   25 LALSVGPDATTATVNFETERYGDKELKIATVNKLRQQIRNSVRTSIDI 168
            L+LS  P A  A+V F+ +RYGDKELKIATVNKL+Q++RN++   + +
Sbjct:   35 LSLSSTPPAR-ASVAFDPDRYGDKELKIATVNKLKQKLRNAIAGDLSL 81
[Close]
BLAST of mRNA_M-pyrifera_M_contig9987.22965.1 vs. uniprot
Match: A0A7S1FWQ2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWQ2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.620e-6
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   37 VGPDATTATVNFETERYGDKELKIATVNKLRQQIRNSVRT 156
            + P    ATV F+ +RYGDKELKIATVNKLRQ +R+++ T
Sbjct:   76 IQPQEAYATVFFDPDRYGDKELKIATVNKLRQNVRSTILT 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig9987.22965.1 vs. uniprot
Match: W7U1L4_9STRA (L-ascorbate peroxidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1L4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.010e-5
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   25 LALSVGPDATTATVNFETERYGDKELKIATVNKLRQQIRNSVRTSIDI 168
            L+LS  P A  A+V F+ +RYGDKELKIATVNKL+Q++RN++   + +
Sbjct:   80 LSLSSTPPAR-ASVAFDPDRYGDKELKIATVNKLKQKLRNAIAGDLSL 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig9987.22965.1 vs. uniprot
Match: A0A7S2QWC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QWC3_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.790e-5
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   43 PDATTATVNFETERYGDKELKIATVNKLRQQIRNSV 150
            P   TA+V ++ +RYGDKELKIATVNK+RQ +R+++
Sbjct:   70 PGQATASVFYDPDRYGDKELKIATVNKIRQNVRDAI 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig9987.22965.1 vs. uniprot
Match: A0A7R9UI27_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UI27_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 9.380e-5
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   34 SVGPDATTATVNFETERYGDKELKIATVNKLRQQIRNSV 150
            S G  A +ATV  + +RYGDKELKIATV  ++QQ+RNS+
Sbjct:   97 SCGGSAASATVFLDPDRYGDKELKIATVASMKQQLRNSI 135
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9987.22965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LR83_ECTSI4.630e-1480.39PEROXIDASE_4 domain-containing protein n=2 Tax=Ect... [more]
K8ZA26_NANGC1.710e-654.17Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S1FWQ2_9STRA7.620e-660.00Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
W7U1L4_9STRA1.010e-554.17L-ascorbate peroxidase n=1 Tax=Nannochloropsis gad... [more]
A0A7S2QWC3_9STRA6.790e-558.33Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A7R9UI27_9STRA9.380e-558.97Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9987contigM-pyrifera_M_contig9987:1709..1882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue9.2e-12
Seed eggNOG ortholog2880.D8LR83
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Peroxidase
EggNOG OGs2DJYV@1,2S61P@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.9656804-CDS-M-pyrifera_M_contig9987:1708..18821622816915.9656804-CDS-M-pyrifera_M_contig9987:1708..1882Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9987 1709..1882 -
1692278253.4580567-CDS-M-pyrifera_M_contig9987:1708..18821692278253.4580567-CDS-M-pyrifera_M_contig9987:1708..1882Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9987 1709..1882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9987.22965.1prot_M-pyrifera_M_contig9987.22965.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9987 1709..1882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9987.22965.1

>prot_M-pyrifera_M_contig9987.22965.1 ID=prot_M-pyrifera_M_contig9987.22965.1|Name=mRNA_M-pyrifera_M_contig9987.22965.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
ASVAASIGLALSVGPDATTATVNFETERYGDKELKIATVNKLRQQIRNSV
RTSIDIE*
back to top

mRNA from alignment at M-pyrifera_M_contig9987:1709..1882-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9987.22965.1 ID=mRNA_M-pyrifera_M_contig9987.22965.1|Name=mRNA_M-pyrifera_M_contig9987.22965.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig9987:1709..1882- (Macrocystis pyrifera P11B4 male)
GCGTCCGTGGCGGCGTCCATCGGTCTCGCCCTGTCCGTCGGGCCTGACGC
TACGACTGCGACTGTCAATTTCGAGACGGAGCGGTACGGGGACAAGGAGC
TAAAGATCGCCACAGTTAACAAGCTCAGGCAGCAGATCAGAAACTCGGTG
AGGACTTCTATCGATATTGAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9987:1709..1882-

>mRNA_M-pyrifera_M_contig9987.22965.1 ID=mRNA_M-pyrifera_M_contig9987.22965.1|Name=mRNA_M-pyrifera_M_contig9987.22965.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig9987:1709..1882- (Macrocystis pyrifera P11B4 male)
GCGTCCGTGGCGGCGTCCATCGGTCTCGCCCTGTCCGTCGGGCCTGACGC
TACGACTGCGACTGTCAATTTCGAGACGGAGCGGTACGGGGACAAGGAGC
TAAAGATCGCCACAGTTAACAAGCTCAGGCAGCAGATCAGAAACTCGGTG
AGGACTTCTATCGATATTGAGTAGGCGTCCGTGGCGGCGTCCATCGGTCT
CGCCCTGTCCGTCGGGCCTGACGCTACGACTGCGACTGTCAATTTCGAGA
CGGAGCGGTACGGGGACAAGGAGCTAAAGATCGCCACAGTTAACAAGCTC
AGGCAGCAGATCAGAAACTCGGTGAGGACTTCTATCGATATTGAGTAG
back to top